JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TXN2_chr22_36462046_36486640	0/0	c0004	501	1	1	0	0	0	0	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	c0005	501	1	1	0	0	0	0	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	c0006	501	1	0	0	1	0	0	copy fasta	TXN2	chr22	36462046	36486640
TXNDC11_chr16_11674083_11747857	0/0	c0001	2877	129	25	22	60	9	13	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/1	c0002	2877	84	1	23	42	6	11	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	1/0	c0003	2877	76	19	14	30	2	10	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0004	2877	28	2	0	19	0	7	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0005	2877	15	14	1	0	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0006	2877	6	0	0	5	0	1	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0007	2877	4	3	1	0	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0008	2877	3	0	0	3	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0009	2877	3	2	1	0	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0010	2877	3	3	0	0	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0011	2877	2	2	0	0	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0012	2877	2	0	0	2	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0013	2877	2	2	0	0	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0014	2877	2	2	0	0	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0015	2877	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0016	2877	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0017	2877	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0018	2877	1	1	0	0	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0019	2877	1	0	0	0	1	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0020	2877	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0021	2877	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0022	2877	1	1	0	0	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0023	2877	1	1	0	0	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0024	2877	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0025	2877	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0026	2877	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0027	2877	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0028	2877	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	c0029	2877	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC12_chr1_52015131_52060191	1/1	c0001	519	237	81	32	82	6	34	copy fasta	TXNDC12	chr1	52015131	52060191
TXNDC12_chr1_52015131_52060191	0/0	c0002	519	7	6	1	0	0	0	copy fasta	TXNDC12	chr1	52015131	52060191
TXNDC12_chr1_52015131_52060191	0/0	c0003	519	4	3	1	0	0	0	copy fasta	TXNDC12	chr1	52015131	52060191
TXNDC12_chr1_52015131_52060191	0/0	c0004	519	4	0	0	4	0	0	copy fasta	TXNDC12	chr1	52015131	52060191
TXNDC15_chr5_134869371_134906635	1/1	c0001	1083	336	87	72	124	10	41	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	c0002	1083	65	4	6	48	2	5	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	c0003	1083	12	0	0	12	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	c0004	1083	1	0	0	1	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	c0005	1083	1	0	0	1	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	c0006	1083	1	0	0	1	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	c0007	1083	1	0	0	1	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	c0008	1083	1	1	0	0	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC16_chr14_52425596_52557505	0/1	c0001	2478	79	11	6	35	5	21	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	1/0	c0002	2478	73	13	13	28	6	12	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	c0003	2478	66	12	7	40	1	6	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	c0004	2478	9	7	2	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	c0005	2478	3	1	1	0	0	1	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	c0006	2478	2	1	1	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505