JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TXNDC16_chr14_52425596_52557505	0/0	c0007	2478	1	1	0	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	c0008	2478	1	1	0	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	c0009	2478	1	0	1	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	c0010	2478	1	0	1	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	c0011	2478	1	1	0	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	c0012	2478	1	0	0	1	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC17_chr17_6636060_6649541	1/1	c0001	372	407	87	67	192	14	45	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC17_chr17_6636060_6649541	0/0	c0002	372	8	7	1	0	0	0	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC17_chr17_6636060_6649541	0/0	c0003	372	3	0	2	0	0	1	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC17_chr17_6636060_6649541	0/0	c0004	372	1	1	0	0	0	0	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC17_chr17_6636060_6649541	0/0	c0005	372	1	1	0	0	0	0	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC2_chr18_9880973_9894275	0/0	c0001	1461	221	25	35	132	10	19	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0002	1416	43	5	1	36	1	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0003	1416	36	21	10	0	0	5	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0004	1461	30	8	11	6	0	5	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0005	1461	23	1	3	6	2	11	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0006	1461	13	0	9	0	1	3	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0007	1461	13	13	0	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/1	c0008	1461	9	1	3	0	3	1	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0009	1461	5	1	4	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0010	1416	5	5	0	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	1/0	c0011	1461	4	1	2	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0012	1461	4	0	0	4	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0013	1461	3	1	2	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0014	1416	3	0	1	0	1	1	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0015	1461	2	0	0	2	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0016	1461	2	0	1	0	0	1	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0017	1461	2	2	0	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0018	1461	2	0	0	2	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0019	1461	2	2	0	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0020	1416	2	0	2	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0021	1461	1	1	0	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0022	1461	1	1	0	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0023	1461	1	0	0	1	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	c0024	1461	1	0	0	1	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC5_chr6_7876517_7915788	1/1	c0001	1299	329	68	55	150	14	40	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	c0002	1299	27	22	2	0	2	1	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	c0003	1299	24	0	7	17	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	c0004	1299	5	4	1	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	c0005	1302	4	0	4	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	c0006	1299	2	2	0	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	c0007	1299	2	0	1	0	0	1	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	c0008	1299	1	1	0	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	c0009	1299	1	0	0	1	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	c0010	1299	1	0	0	1	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	c0011	1299	1	1	0	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	c0012	1299	1	0	1	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	c0013	1299	1	0	1	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	c0014	1299	1	0	0	0	0	1	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	c0015	1299	1	0	0	0	0	1	copy fasta	TXNDC5	chr6	7876517	7915788