JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TXNDC5_chr6_7876517_7915788	0/0	c0016	1299	1	0	0	1	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC8_chr9_110298476_110342863	1/1	c0001	288	391	74	75	184	16	40	copy fasta	TXNDC8	chr9	110298476	110342863
TXNDC8_chr9_110298476_110342863	0/0	c0002	288	20	16	2	0	0	2	copy fasta	TXNDC8	chr9	110298476	110342863
TXNDC8_chr9_110298476_110342863	0/0	c0003	288	2	0	0	2	0	0	copy fasta	TXNDC8	chr9	110298476	110342863
TXNDC8_chr9_110298476_110342863	0/0	c0004	288	1	1	0	0	0	0	copy fasta	TXNDC8	chr9	110298476	110342863
TXNDC8_chr9_110298476_110342863	0/0	c0005	288	1	0	1	0	0	0	copy fasta	TXNDC8	chr9	110298476	110342863
TXNDC8_chr9_110298476_110342863	0/0	c0006	288	1	1	0	0	0	0	copy fasta	TXNDC8	chr9	110298476	110342863
TXNDC9_chr2_99313982_99341333	1/1	c0001	681	353	84	72	148	11	36	copy fasta	TXNDC9	chr2	99313982	99341333
TXNDC9_chr2_99313982_99341333	0/0	c0002	681	12	9	3	0	0	0	copy fasta	TXNDC9	chr2	99313982	99341333
TXNDC9_chr2_99313982_99341333	0/0	c0003	681	2	2	0	0	0	0	copy fasta	TXNDC9	chr2	99313982	99341333
TXNDC9_chr2_99313982_99341333	0/0	c0004	681	2	0	1	0	1	0	copy fasta	TXNDC9	chr2	99313982	99341333
TXNDC9_chr2_99313982_99341333	0/0	c0005	681	1	1	0	0	0	0	copy fasta	TXNDC9	chr2	99313982	99341333
TXNIP_chr1_145987435_146001579	1/1	c0001	1176	400	94	73	187	10	34	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	c0002	1176	2	0	0	2	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	c0003	1176	2	0	0	0	0	2	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	c0004	1176	1	0	1	0	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	c0005	1176	1	0	0	0	0	1	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	c0006	1176	1	0	0	0	0	1	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	c0007	1176	1	0	0	1	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNL1_chr18_56592209_56643592	1/1	c0001	870	285	67	42	139	12	23	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	c0002	870	54	21	4	23	2	4	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	c0003	870	1	0	0	0	0	1	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	c0004	870	1	1	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	c0005	870	1	1	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL4A_chr18_79965813_79993563	1/1	c0001	429	388	92	68	170	14	42	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	c0002	429	1	0	0	0	0	1	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	c0003	429	1	0	0	0	0	1	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4B_chr16_72079857_72098620	1/1	c0001	450	392	67	76	190	16	41	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	c0002	450	17	16	1	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	c0003	450	1	0	0	0	0	1	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	c0004	450	1	1	0	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	c0005	450	1	0	1	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNRD1_chr12_104210779_104355307	0/1	c0001	1950	134	35	25	49	7	17	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	c0002	1950	92	30	11	35	5	11	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	1/0	c0003	1950	47	11	15	12	5	3	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	c0004	1950	9	3	1	2	0	3	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	c0005	1950	9	4	2	0	1	2	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	c0006	1950	5	5	0	0	0	0	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	c0007	1950	2	2	0	0	0	0	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	c0008	1950	1	1	0	0	0	0	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	c0009	1950	1	1	0	0	0	0	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	c0010	1950	1	1	0	0	0	0	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	c0011	1950	1	1	0	0	0	0	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD2_chr22_19870522_19946818	0/0	c0001	1575	111	6	14	78	5	8	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0002	1575	68	3	16	38	1	10	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/1	c0003	1575	41	4	10	15	4	7	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0004	1575	20	8	2	7	0	3	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	1/0	c0005	1575	15	0	7	3	0	4	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0006	1575	14	8	6	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0007	1575	14	4	4	2	0	4	copy fasta	TXNRD2	chr22	19870522	19946818