JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BLMH_chr17_30243203_30296944	0/0	c0010	1368	1	0	0	1	0	0	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	c0011	1368	1	1	0	0	0	0	copy fasta	BLMH	chr17	30243203	30296944
BLM_chr15_90712346_90821166	1/0	c0001	4254	172	48	25	69	6	23	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/1	c0002	4254	38	11	4	20	1	1	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0003	4254	12	2	2	0	4	4	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0004	4254	7	0	1	6	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0005	4254	7	0	1	6	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0006	4254	6	0	0	4	1	1	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0007	4254	6	6	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0008	4254	4	3	1	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0009	4254	4	3	0	1	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0010	4254	3	3	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0011	4254	3	3	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0012	4254	2	1	1	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0013	4254	2	2	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0014	4254	1	1	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0015	4254	1	1	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0016	4254	1	0	1	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0017	4254	1	1	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0018	4254	1	1	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0019	4254	1	0	0	1	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0020	4254	1	0	0	1	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0021	4254	1	1	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0022	4254	1	0	1	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0023	4254	1	1	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0024	4254	1	0	0	0	0	1	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0025	4254	1	1	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0026	4254	1	0	1	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	c0027	4254	1	1	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLNK_chr10_96184171_96276569	1/0	c0001	1371	159	45	28	63	4	18	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/1	c0002	1371	131	15	34	51	8	22	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	c0003	1371	11	11	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	c0004	1371	7	7	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	c0005	1371	3	0	0	3	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	c0006	1371	2	0	0	0	0	2	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	c0007	1371	2	2	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	c0008	1371	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	c0009	1371	1	0	1	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	c0010	1371	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	c0011	1371	1	0	0	1	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	c0012	1371	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	c0013	1371	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	c0014	1371	1	0	1	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLOC1S1_chr12_55711046_55724703	1/1	c0001	462	408	94	74	185	14	39	copy fasta	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	c0002	462	1	0	0	0	0	1	copy fasta	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	c0003	462	1	0	0	1	0	0	copy fasta	BLOC1S1	chr12	55711046	55724703
BLOC1S2_chr10_100268293_100291680	1/1	c0001	429	310	53	61	142	13	39	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	c0002	429	45	17	8	16	1	3	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	c0003	429	16	15	1	0	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	c0004	429	6	6	0	0	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680