JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TXNRD2_chr22_19870522_19946818	0/0	c0008	1575	13	9	1	2	0	1	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0009	1575	8	8	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0010	1575	7	7	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0011	1575	7	6	1	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0012	1575	6	3	3	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0013	1575	5	0	3	0	2	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0014	1575	4	0	1	2	0	1	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0015	1575	4	3	0	0	0	1	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0016	1575	3	3	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0017	1575	2	2	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0018	1575	2	2	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0019	1575	2	0	2	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0020	1575	2	2	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0021	1575	2	0	2	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0022	1575	2	0	0	2	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0023	1575	1	0	0	0	0	1	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0024	1575	1	1	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0025	1575	1	1	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0026	1575	1	0	1	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0027	1575	1	0	0	0	1	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0028	1575	1	0	0	0	0	1	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0029	1575	1	0	0	1	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0030	1575	1	1	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0031	1575	1	1	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0032	1575	1	1	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0033	1575	1	0	1	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0034	1575	1	1	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0035	1575	1	1	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0036	1575	1	1	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0037	1575	1	1	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0038	1575	1	0	0	1	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0039	1575	1	0	0	0	1	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0040	1575	1	0	0	0	0	1	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0041	1575	1	0	0	1	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	c0042	1575	1	1	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD3_chr3_126602050_126660124	0/1	c0001	1932	290	77	69	104	13	26	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	1/0	c0002	1932	37	9	0	18	1	8	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	c0003	1932	8	0	2	6	0	0	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	c0004	1932	4	0	3	0	0	1	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	c0005	1932	4	4	0	0	0	0	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	c0006	1932	3	0	0	3	0	0	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	c0007	1932	1	0	0	0	0	1	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	c0008	1932	1	1	0	0	0	0	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	c0009	1932	1	0	0	1	0	0	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	c0010	1932	1	0	0	0	0	1	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	c0011	1932	1	1	0	0	0	0	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	c0012	1932	1	0	0	0	0	1	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	c0013	1932	1	1	0	0	0	0	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	c0014	1932	1	1	0	0	0	0	copy fasta	TXNRD3	chr3	126602050	126660124
TXN_chr9_110238810_110261507	1/1	c0001	318	465	98	82	220	18	45	copy fasta	TXN	chr9	110238810	110261507