JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TXN_chr9_110238810_110261507	0/0	c0002	318	1	0	0	0	0	1	copy fasta	TXN	chr9	110238810	110261507
TYK2_chr19_10345533_10385572	1/0	c0001	3564	191	60	45	58	10	17	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/1	c0002	3564	94	9	9	61	2	12	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0003	3564	26	10	3	8	2	3	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0004	3564	12	0	6	2	0	4	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0005	3564	9	0	0	9	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0006	3564	7	0	6	0	1	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0007	3564	5	5	0	0	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0008	3564	5	0	4	0	1	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0009	3564	4	4	0	0	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0010	3564	3	3	0	0	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0011	3564	3	0	0	3	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0012	3564	2	0	0	2	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0013	3564	1	0	0	1	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0014	3564	1	0	0	0	0	1	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0015	3564	1	0	0	1	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0016	3564	1	0	0	0	0	1	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0017	3564	1	1	0	0	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0018	3564	1	1	0	0	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0019	3564	1	0	1	0	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0020	3564	1	0	0	1	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0021	3564	1	0	0	0	0	1	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0022	3564	1	0	0	1	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0023	3564	1	0	0	0	0	1	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0024	3564	1	0	0	1	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0025	3564	1	0	0	1	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0026	3564	1	1	0	0	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	c0027	3564	1	0	0	1	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYMP_chr22_50520752_50535012	0/1	c0001	1449	172	30	23	96	5	17	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	1/0	c0002	1449	76	24	23	12	8	8	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	c0003	1449	67	6	9	44	2	6	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	c0004	1449	55	8	14	21	1	11	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	c0005	1449	19	16	2	1	0	0	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	c0006	1449	14	12	2	0	0	0	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	c0007	1449	2	2	0	0	0	0	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	c0008	1449	2	0	1	0	0	1	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	c0009	1449	1	0	0	0	0	1	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	c0010	1449	1	0	1	0	0	0	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	c0011	1449	1	0	0	1	0	0	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	c0012	1449	1	0	0	1	0	0	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	c0013	1449	1	0	1	0	0	0	copy fasta	TYMP	chr22	50520752	50535012
TYMS_chr18_652653_678578	1/1	c0001	942	441	96	77	204	18	44	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	c0002	942	37	0	2	29	0	6	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	c0003	942	2	0	2	0	0	0	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	c0004	942	1	0	0	1	0	0	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	c0005	942	1	0	1	0	0	0	copy fasta	TYMS	chr18	652653	678578
TYRO3_chr15_41554212_41588589	1/1	c0001	2673	192	59	29	82	2	18	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	c0002	2673	93	18	29	28	6	12	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	c0003	2673	27	6	6	0	4	11	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	c0004	2673	2	2	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589