JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TYRO3_chr15_41554212_41588589	0/0	c0005	2673	2	0	2	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	c0006	2673	1	0	0	0	0	1	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	c0007	2673	1	0	0	0	0	1	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	c0008	2673	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	c0009	2673	1	0	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	c0010	2673	1	0	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	c0011	2673	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	c0012	2673	1	0	0	0	0	1	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	c0013	2673	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYROBP_chr19_35899403_35913295	1/1	c0001	342	375	86	79	153	15	40	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	c0002	342	21	0	0	16	1	4	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	c0003	342	3	0	1	0	2	0	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	c0004	342	1	0	0	1	0	0	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	c0005	342	1	0	0	0	0	1	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	c0006	342	1	1	0	0	0	0	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	c0007	342	1	1	0	0	0	0	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	c0008	342	1	1	0	0	0	0	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	c0009	342	1	1	0	0	0	0	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	c0010	342	1	0	0	0	0	1	copy fasta	TYROBP	chr19	35899403	35913295
TYRP1_chr9_12688385_12715285	1/1	c0001	1614	419	84	76	195	14	48	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	c0002	1614	7	0	5	0	2	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	c0003	1614	3	0	0	3	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	c0004	1614	3	3	0	0	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	c0005	1614	2	1	1	0	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	c0006	1614	1	1	0	0	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	c0007	1614	1	0	0	1	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	c0008	1614	1	0	0	1	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	c0009	1614	1	1	0	0	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYR_chr11_89172875_89300759	1/0	c0001	1590	266	76	29	124	7	29	copy fasta	TYR	chr11	89172875	89300759
TYR_chr11_89172875_89300759	0/1	c0002	1590	16	4	8	1	1	1	copy fasta	TYR	chr11	89172875	89300759
TYR_chr11_89172875_89300759	0/0	c0003	1590	12	0	5	0	3	4	copy fasta	TYR	chr11	89172875	89300759
TYR_chr11_89172875_89300759	0/0	c0004	1590	6	6	0	0	0	0	copy fasta	TYR	chr11	89172875	89300759
TYR_chr11_89172875_89300759	0/0	c0005	1590	2	0	1	0	1	0	copy fasta	TYR	chr11	89172875	89300759
TYR_chr11_89172875_89300759	0/0	c0006	1590	2	2	0	0	0	0	copy fasta	TYR	chr11	89172875	89300759
TYR_chr11_89172875_89300759	0/0	c0007	1590	1	0	1	0	0	0	copy fasta	TYR	chr11	89172875	89300759
TYR_chr11_89172875_89300759	0/0	c0008	1590	1	0	0	1	0	0	copy fasta	TYR	chr11	89172875	89300759
TYSND1_chr10_70132981_70151700	0/1	c0001	1701	182	20	36	104	4	17	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	1/0	c0002	1701	140	39	22	68	1	9	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0003	1701	75	25	22	0	10	18	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0004	1701	17	1	0	14	0	2	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0005	1701	13	0	0	13	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0006	1701	5	5	0	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0007	1701	3	0	2	0	1	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0008	1701	3	0	0	0	2	1	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0009	1701	3	0	0	1	0	2	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0010	1701	2	2	0	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0011	1701	2	2	0	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0012	1701	2	2	0	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0013	1701	1	0	0	0	0	1	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0014	1701	1	0	1	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700