JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TYSND1_chr10_70132981_70151700	0/0	c0015	1701	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0016	1701	1	0	1	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0017	1701	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0018	1701	1	1	0	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0019	1701	1	1	0	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0020	1701	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0021	1701	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0022	1701	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	c0023	1683	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYW1B_chr7_72569513_72833200	0/1	c0001	2008	85	10	15	45	4	10	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0002	2008	66	0	7	50	1	8	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0003	2007	53	20	7	18	1	7	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0004	2007	19	0	6	9	2	2	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0005	2008	12	4	5	0	0	3	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0006	2008	11	10	0	1	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0007	2008	10	9	1	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0008	2008	6	5	1	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0009	2008	4	4	0	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0010	2008	3	3	0	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0011	2008	2	0	0	2	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0012	2008	2	1	0	0	0	1	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0013	2008	1	0	1	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0014	2008	1	0	0	1	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0015	2008	1	0	0	1	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0016	2007	1	0	0	0	0	1	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	1/0	c0017	2007	1	0	0	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0018	2008	1	1	0	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0019	2008	1	1	0	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0020	2008	1	0	1	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0021	2008	1	0	0	1	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0022	2008	1	1	0	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0023	2008	1	1	0	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0024	2008	1	0	1	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	c0025	2008	1	0	1	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1_chr7_66991833_67244514	1/1	c0001	2199	210	38	36	99	8	27	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0002	2199	53	0	12	38	1	2	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0003	2199	40	21	6	2	1	10	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0004	2199	26	1	13	10	0	2	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0005	2199	11	8	3	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0006	2199	7	7	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0007	2199	2	2	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0008	2199	1	0	0	1	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0009	2199	1	0	0	1	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0010	2199	1	1	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0011	2199	1	1	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0012	2199	1	1	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0013	2199	1	1	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0014	2199	1	0	0	1	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0015	2199	1	0	0	1	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0016	2199	1	1	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514