JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TYW1_chr7_66991833_67244514	0/0	c0017	2199	1	1	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0018	2199	1	0	0	0	0	1	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0019	2199	1	0	0	1	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0020	2199	1	1	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0021	2199	1	1	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	c0022	2199	1	1	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW3_chr1_74728152_74771677	1/0	c0001	780	181	45	45	59	10	21	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/1	c0002	780	139	25	22	74	2	15	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	c0003	780	7	7	0	0	0	0	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	c0004	780	3	3	0	0	0	0	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	c0005	780	1	0	1	0	0	0	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	c0006	780	1	0	0	1	0	0	copy fasta	TYW3	chr1	74728152	74771677
TYW5_chr2_199923913_199960491	1/1	c0001	948	331	78	67	145	11	28	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	c0002	948	52	0	5	40	1	6	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	c0003	948	1	0	0	1	0	0	copy fasta	TYW5	chr2	199923913	199960491
U2AF1L4_chr19_35737527_35750418	1/1	c0001	546	401	92	74	175	14	44	copy fasta	U2AF1L4	chr19	35737527	35750418
U2AF1L4_chr19_35737527_35750418	0/0	c0002	546	2	2	0	0	0	0	copy fasta	U2AF1L4	chr19	35737527	35750418
U2AF1L4_chr19_35737527_35750418	0/0	c0003	546	1	0	0	1	0	0	copy fasta	U2AF1L4	chr19	35737527	35750418
U2AF1_chr21_43087956_43112570	0/0	c0001	723	146	14	12	90	6	24	copy fasta	U2AF1	chr21	43087956	43112570
U2AF1_chr21_43087956_43112570	0/0	c0002	723	2	2	0	0	0	0	copy fasta	U2AF1	chr21	43087956	43112570
U2AF1_chr21_43087956_43112570	0/0	c0003	723	2	2	0	0	0	0	copy fasta	U2AF1	chr21	43087956	43112570
U2AF2_chr19_55650035_55679716	0/1	c0001	1428	287	52	69	117	14	34	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	1/0	c0002	1428	79	22	8	38	2	8	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	c0003	1428	16	16	0	0	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	c0004	1428	3	3	0	0	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	c0005	1428	2	0	2	0	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	c0006	1428	2	2	0	0	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	c0007	1428	1	1	0	0	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	c0008	1428	1	0	1	0	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	c0009	1428	1	1	0	0	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	c0010	1428	1	0	0	1	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	c0011	1428	1	1	0	0	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2SURP_chr3_142996570_143065725	1/1	c0001	3090	358	74	65	164	12	41	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	c0002	3090	10	10	0	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	c0003	3090	2	2	0	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	c0004	3090	2	1	1	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	c0005	3090	1	0	1	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	c0006	3090	1	0	0	1	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	c0007	3090	1	0	0	1	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	c0008	3090	1	0	1	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	c0009	3090	1	1	0	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	c0010	3090	1	0	0	0	0	1	copy fasta	U2SURP	chr3	142996570	143065725
UACA_chr15_70649554_70768558	0/1	c0001	4251	112	14	24	52	5	16	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	1/0	c0002	4251	74	10	7	51	1	4	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0003	4251	52	15	9	14	4	10	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0004	4251	25	16	2	7	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0005	4251	8	8	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0006	4251	7	6	1	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0007	4251	6	0	0	6	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0008	4251	5	4	0	0	0	1	copy fasta	UACA	chr15	70649554	70768558