JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UACA_chr15_70649554_70768558	0/0	c0009	4251	4	4	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0010	4251	4	2	2	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0011	4251	2	2	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0012	4251	1	0	1	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0013	4251	1	1	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0014	4251	1	0	0	1	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0015	4251	1	0	1	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0016	4251	1	0	0	1	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0017	4251	1	0	0	1	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0018	4251	1	0	0	0	0	1	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0019	4251	1	1	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0020	4251	1	0	1	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0021	4251	1	0	0	1	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	c0022	4251	1	1	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UAP1L1_chr9_137072517_137089538	0/0	c0001	1524	159	36	27	77	4	15	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	1/1	c0002	1524	134	13	40	54	9	16	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0003	1524	34	3	4	16	2	9	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0004	1524	30	28	0	2	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0005	1524	9	1	1	1	1	5	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0006	1524	2	1	1	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0007	1524	1	0	0	0	0	1	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0008	1524	1	0	0	1	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0009	1524	1	1	0	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0010	1524	1	1	0	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0011	1524	1	0	1	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0012	1524	1	0	1	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0013	1524	1	0	0	1	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0014	1524	1	0	0	1	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0015	1524	1	1	0	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0016	1524	1	0	0	1	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0017	1524	1	1	0	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0018	1524	1	0	1	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0019	1524	1	1	0	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	c0020	1524	1	1	0	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1_chr1_162556722_162606240	1/1	c0001	1569	380	59	76	180	15	48	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	c0002	1569	7	7	0	0	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	c0003	1569	6	6	0	0	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	c0004	1569	5	5	0	0	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	c0005	1569	4	4	0	0	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	c0006	1569	3	3	0	0	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	c0007	1569	3	3	0	0	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	c0008	1569	2	0	0	2	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	c0009	1569	1	0	0	0	1	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	c0010	1569	1	1	0	0	0	0	copy fasta	UAP1	chr1	162556722	162606240
UBA1_chrX_47188829_47220128	1/1	c0001	3177	174	35	26	88	6	17	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0002	3177	50	9	11	17	1	12	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0003	3177	26	20	6	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0004	3177	8	0	0	8	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0005	3177	3	3	0	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0006	3177	2	2	0	0	0	0	copy fasta	UBA1	chrX	47188829	47220128