JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBA1_chrX_47188829_47220128	0/0	c0007	3177	2	2	0	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0008	3177	2	2	0	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0009	3178	1	0	0	1	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0010	3177	1	0	1	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0011	3177	1	1	0	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0012	3182	1	1	0	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0013	3177	1	1	0	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0014	3177	1	1	0	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0015	3177	1	0	1	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0016	3177	1	0	0	1	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0017	3177	1	0	1	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0018	3161	1	0	0	1	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0019	3177	1	0	0	1	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0020	3177	1	1	0	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0021	3177	1	0	0	0	0	1	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	c0022	3179	1	0	0	1	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA2_chr19_34423381_34476251	0/0	c0001	1923	238	62	50	90	12	24	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	1/1	c0002	1923	77	22	12	24	4	13	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	c0003	1923	2	0	0	0	0	2	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	c0004	1923	1	1	0	0	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	c0005	1923	1	0	0	0	0	1	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	c0006	1923	1	1	0	0	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA3_chr3_69049730_69085365	1/1	c0001	1392	412	90	73	191	14	42	copy fasta	UBA3	chr3	69049730	69085365
UBA3_chr3_69049730_69085365	0/0	c0002	1392	3	3	0	0	0	0	copy fasta	UBA3	chr3	69049730	69085365
UBA3_chr3_69049730_69085365	0/0	c0003	1392	2	0	0	0	2	0	copy fasta	UBA3	chr3	69049730	69085365
UBA3_chr3_69049730_69085365	0/0	c0004	1392	1	0	1	0	0	0	copy fasta	UBA3	chr3	69049730	69085365
UBA3_chr3_69049730_69085365	0/0	c0005	1392	1	1	0	0	0	0	copy fasta	UBA3	chr3	69049730	69085365
UBA3_chr3_69049730_69085365	0/0	c0006	1392	1	0	0	1	0	0	copy fasta	UBA3	chr3	69049730	69085365
UBA52_chr19_18566857_18582550	1/1	c0001	387	412	96	80	172	16	46	copy fasta	UBA52	chr19	18566857	18582550
UBA5_chr3_132655329_132684794	0/0	c0001	1215	333	89	42	160	14	28	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	c0002	1215	3	3	0	0	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA6_chr4_67607652_67706155	1/1	c0001	3159	169	47	36	63	6	15	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	c0002	3159	77	14	19	35	4	5	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	c0003	3159	56	3	8	34	4	7	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	c0004	3159	11	10	0	0	0	1	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	c0005	3159	4	1	3	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	c0006	3159	1	0	0	0	0	1	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	c0007	3159	1	1	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	c0008	3159	1	1	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	c0009	3159	1	1	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	c0010	3159	1	1	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	c0011	3159	1	1	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	c0012	3159	1	0	0	0	0	1	copy fasta	UBA6	chr4	67607652	67706155
UBA7_chr3_49800209_49818953	1/1	c0001	3039	311	70	58	118	16	47	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	c0002	3039	10	8	2	0	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	c0003	3039	6	0	6	0	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	c0004	3039	6	6	0	0	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	c0005	3032	1	0	0	1	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	c0006	3039	1	1	0	0	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	c0007	3039	1	1	0	0	0	0	copy fasta	UBA7	chr3	49800209	49818953