JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBA7_chr3_49800209_49818953	0/0	c0008	3039	1	0	1	0	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	c0009	3039	1	0	0	1	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	c0010	3039	1	0	0	1	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	c0011	3039	1	1	0	0	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	c0012	3039	1	1	0	0	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	c0013	3039	1	0	1	0	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	c0014	3039	1	0	0	0	0	1	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	c0015	3039	1	0	0	1	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBAC1_chr9_135927969_135966373	0/1	c0001	1218	268	65	49	119	8	26	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	c0002	1215	58	1	8	34	3	12	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	c0003	1218	13	12	1	0	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	c0004	1218	8	1	6	0	1	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	1/0	c0005	1218	5	4	0	0	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	c0006	1218	4	4	0	0	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	c0007	1215	4	0	0	4	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	c0008	1218	4	0	2	0	0	2	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	c0009	1218	4	3	1	0	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	c0010	1218	1	0	1	0	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	c0011	1218	1	0	0	1	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	c0012	1218	1	0	1	0	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	c0013	1218	1	0	1	0	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	c0014	1218	1	1	0	0	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	c0015	1218	1	1	0	0	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	c0016	1218	1	0	0	0	0	1	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	c0017	1218	1	1	0	0	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	c0018	1218	1	1	0	0	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	c0019	1218	1	0	0	0	0	1	copy fasta	UBAC1	chr9	135927969	135966373
UBAC2_chr13_99195854_99391504	1/1	c0001	1035	377	82	72	163	16	42	copy fasta	UBAC2	chr13	99195854	99391504
UBAC2_chr13_99195854_99391504	0/0	c0002	1035	2	0	0	2	0	0	copy fasta	UBAC2	chr13	99195854	99391504
UBAC2_chr13_99195854_99391504	0/0	c0003	1035	1	0	0	1	0	0	copy fasta	UBAC2	chr13	99195854	99391504
UBALD1_chr16_4603884_4619888	1/1	c0001	534	335	93	57	136	8	39	copy fasta	UBALD1	chr16	4603884	4619888
UBALD1_chr16_4603884_4619888	0/0	c0002	534	2	2	0	0	0	0	copy fasta	UBALD1	chr16	4603884	4619888
UBALD1_chr16_4603884_4619888	0/0	c0003	534	1	1	0	0	0	0	copy fasta	UBALD1	chr16	4603884	4619888
UBALD1_chr16_4603884_4619888	0/0	c0004	534	1	0	1	0	0	0	copy fasta	UBALD1	chr16	4603884	4619888
UBALD1_chr16_4603884_4619888	0/0	c0005	534	1	0	0	0	0	1	copy fasta	UBALD1	chr16	4603884	4619888
UBALD2_chr17_76260348_76276298	0/0	c0001	495	253	52	39	124	9	29	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	1/1	c0002	495	109	12	30	45	5	15	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	c0003	495	43	30	6	6	0	1	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	c0004	495	2	2	0	0	0	0	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	c0005	495	1	0	0	0	0	1	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	c0006	495	1	0	0	1	0	0	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	c0007	495	1	0	1	0	0	0	copy fasta	UBALD2	chr17	76260348	76276298
UBAP1L_chr15_65087760_65120200	1/1	c0001	1146	207	82	47	51	6	19	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	c0002	1147	8	1	5	1	0	1	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	c0003	1146	3	0	2	1	0	0	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	c0004	1146	3	3	0	0	0	0	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	c0005	1146	2	0	2	0	0	0	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	c0006	1146	2	2	0	0	0	0	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	c0007	1146	2	2	0	0	0	0	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	c0008	1147	1	0	1	0	0	0	copy fasta	UBAP1L	chr15	65087760	65120200