JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBAP1L_chr15_65087760_65120200	0/0	c0009	1146	1	0	1	0	0	0	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	c0010	1146	1	0	0	1	0	0	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	c0011	1146	1	1	0	0	0	0	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	c0012	1146	1	1	0	0	0	0	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1_chr9_34174043_34257523	1/1	c0001	1509	324	84	71	117	15	35	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	c0002	1509	9	0	0	8	1	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	c0003	1509	3	3	0	0	0	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	c0004	1509	2	0	0	2	0	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	c0005	1509	1	0	0	1	0	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	c0006	1509	1	0	0	0	0	1	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	c0007	1509	1	0	1	0	0	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	c0008	1509	1	1	0	0	0	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP2L_chr1_154215955_154275847	1/1	c0001	3264	328	80	62	137	10	37	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	c0002	3264	7	7	0	0	0	0	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	c0003	3264	5	5	0	0	0	0	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	c0004	3264	2	0	0	2	0	0	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	c0005	3264	2	0	0	2	0	0	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	c0006	3264	1	0	0	1	0	0	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	c0007	3264	1	0	0	1	0	0	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	c0008	3264	1	0	0	0	0	1	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	c0009	3264	1	0	0	0	0	1	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	c0010	3264	1	0	0	1	0	0	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	c0011	3264	1	0	0	0	0	1	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2_chr9_33916693_34053887	0/0	c0001	3360	145	47	26	48	6	18	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0002	3360	83	5	16	48	3	11	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/1	c0003	3360	80	19	17	29	4	10	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0004	3360	7	0	0	7	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0005	3360	5	4	1	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0006	3360	4	0	4	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0007	3360	3	0	1	0	2	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0008	3360	3	3	0	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0009	3360	3	0	0	3	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0010	3360	3	2	1	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0011	3360	2	0	0	2	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0012	3360	2	0	0	0	0	2	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0013	3360	2	0	0	0	1	1	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0014	3360	2	2	0	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0015	3360	1	1	0	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0016	3360	1	0	0	0	0	1	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0017	3360	1	0	1	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0018	3360	1	0	0	1	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0019	3360	1	0	0	0	0	1	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0020	3360	1	0	0	1	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0021	3360	1	0	0	1	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0022	3360	1	1	0	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0023	3360	1	0	1	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	1/0	c0024	3360	1	0	0	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0025	3360	1	0	0	0	0	1	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	c0026	3360	1	0	0	0	0	1	copy fasta	UBAP2	chr9	33916693	34053887
UBASH3A_chr21_42398902_42452684	0/0	c0001	1986	78	18	10	48	0	2	copy fasta	UBASH3A	chr21	42398902	42452684