JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBASH3A_chr21_42398902_42452684	1/0	c0002	1986	57	10	5	30	5	6	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0003	1986	42	3	17	14	2	6	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0004	1986	41	2	3	33	0	3	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/1	c0005	1986	30	4	9	7	3	6	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0006	1986	26	0	1	21	0	4	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0007	1986	19	0	9	0	3	7	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0008	1986	13	11	2	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0009	1986	13	5	5	2	0	1	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0010	1986	11	2	6	0	2	1	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0011	1986	8	2	5	0	1	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0012	1986	7	5	2	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0013	1986	6	0	0	6	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0014	1986	5	3	1	1	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0015	1986	5	4	1	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0016	1986	5	4	0	0	0	1	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0017	1986	3	1	0	0	0	2	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0018	1986	3	0	0	3	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0019	1986	3	2	1	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0020	1986	3	1	2	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0021	1986	2	0	0	2	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0022	1986	2	0	0	0	0	2	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0023	1986	2	0	0	0	0	2	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0024	1986	2	0	2	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0025	1986	1	0	0	1	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0026	1986	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0027	1986	1	0	1	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0028	1986	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0029	1986	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0030	1986	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0031	1986	1	0	0	1	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0032	1986	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0033	1986	1	0	0	1	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0034	1986	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0035	1986	1	0	0	0	0	1	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0036	1986	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0037	1986	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0038	1986	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0039	1986	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0040	1986	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0041	1986	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0042	1986	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0043	1986	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0044	1986	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0045	1986	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	c0046	1986	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3B_chr11_122650722_122819473	0/0	c0001	1950	120	55	19	37	3	6	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	1/1	c0002	1950	72	5	17	30	3	15	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0003	1950	19	0	9	8	1	1	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0004	1950	13	1	6	2	2	2	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0005	1950	13	0	0	11	0	2	copy fasta	UBASH3B	chr11	122650722	122819473