JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BLOC1S2_chr10_100268293_100291680	0/0	c0005	429	1	1	0	0	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S3_chr19_45173784_45186800	1/1	c0001	609	336	71	70	155	7	31	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	c0002	609	80	27	7	33	2	11	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	c0003	609	3	0	0	0	1	2	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	c0004	609	3	0	0	0	3	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	c0005	609	1	0	0	0	1	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	c0006	609	1	1	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	c0007	609	1	1	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	c0008	609	1	0	1	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S4_chr4_6711174_6722664	1/1	c0001	654	452	99	76	213	16	46	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	0/0	c0002	654	2	1	1	0	0	0	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	0/0	c0003	654	1	0	0	0	0	1	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	0/0	c0004	654	1	0	0	1	0	0	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	0/0	c0005	654	1	0	0	0	0	1	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	0/0	c0006	654	1	0	1	0	0	0	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S5_chr6_8008567_8069389	1/1	c0001	564	362	91	74	139	12	44	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	c0002	564	1	1	0	0	0	0	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	c0003	564	1	0	0	1	0	0	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S6_chr15_45582379_45614708	1/1	c0001	519	359	83	70	158	10	36	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	c0002	519	1	1	0	0	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	c0003	519	1	1	0	0	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	c0004	519	1	1	0	0	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLTP1_chr4_122147331_122367752	1/0	c0001	15282	106	35	13	47	2	8	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0002	15282	74	3	19	39	2	11	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/1	c0003	15282	34	0	4	21	4	4	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0004	15282	20	0	2	18	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0005	15282	15	7	3	0	1	4	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0006	15282	14	13	1	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0007	15282	12	11	1	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0008	15282	4	0	2	0	1	1	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0009	15282	4	0	0	4	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0010	15282	4	0	3	0	1	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0011	15282	3	3	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0012	15282	3	3	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0013	15282	3	1	2	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0014	15282	3	2	1	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0015	15282	2	2	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0016	15282	2	0	0	2	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0017	15282	2	1	1	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0018	15282	2	2	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0019	15282	2	0	0	0	2	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0020	15282	2	2	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0021	15282	1	1	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0022	15282	1	1	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0023	15282	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0024	15282	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0025	15282	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0026	15282	1	1	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0027	15282	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0028	15271	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752