JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBASH3B_chr11_122650722_122819473	0/0	c0006	1950	8	0	3	1	3	1	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0007	1950	8	8	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0008	1950	7	3	1	0	1	2	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0009	1950	4	0	0	3	1	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0010	1950	4	4	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0011	1950	3	0	0	3	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0012	1950	3	3	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0013	1950	3	0	0	2	0	1	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0014	1950	2	0	0	2	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0015	1950	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0016	1950	1	0	0	1	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0017	1950	1	0	0	1	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0018	1950	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0019	1950	1	0	0	1	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0020	1950	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0021	1950	1	0	1	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0022	1950	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0023	1950	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0024	1950	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	c0025	1950	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBB_chr17_16376091_16387740	1/1	c0001	690	329	75	65	140	10	37	copy fasta	UBB	chr17	16376091	16387740
UBB_chr17_16376091_16387740	0/0	c0002	690	18	11	5	2	0	0	copy fasta	UBB	chr17	16376091	16387740
UBB_chr17_16376091_16387740	0/0	c0003	690	2	2	0	0	0	0	copy fasta	UBB	chr17	16376091	16387740
UBB_chr17_16376091_16387740	0/0	c0004	690	1	0	0	0	0	1	copy fasta	UBB	chr17	16376091	16387740
UBB_chr17_16376091_16387740	0/0	c0005	690	1	1	0	0	0	0	copy fasta	UBB	chr17	16376091	16387740
UBB_chr17_16376091_16387740	0/0	c0006	690	1	1	0	0	0	0	copy fasta	UBB	chr17	16376091	16387740
UBC_chr12_124906646_124919650	1/0	c0001	2058	207	20	18	155	0	13	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/1	c0002	2058	98	5	34	33	9	16	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0003	2058	23	1	4	6	1	11	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0004	2058	22	21	1	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0005	2058	14	12	2	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0006	2058	13	0	7	0	6	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0007	2058	12	9	1	2	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0008	2058	10	1	0	6	0	3	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0009	2058	5	4	1	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0010	2058	5	4	1	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0011	1602	4	0	0	4	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0012	2058	3	3	0	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0013	1830	3	0	2	0	1	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0014	2058	2	0	0	2	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0015	2058	2	0	1	0	0	1	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0016	2058	2	2	0	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0017	1602	2	0	1	0	0	1	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0018	1830	1	0	1	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0019	2058	1	0	0	1	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0020	1830	1	1	0	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0021	2058	1	1	0	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0022	2514	1	1	0	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0023	2514	1	1	0	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0024	2058	1	0	0	1	0	0	copy fasta	UBC	chr12	124906646	124919650