JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBC_chr12_124906646_124919650	0/0	c0025	2058	1	1	0	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0026	1374	1	0	1	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0027	1602	1	0	1	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0028	2058	1	0	0	1	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0029	2058	1	0	0	1	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0030	2058	1	0	0	1	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0031	1602	1	0	0	1	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0032	2514	1	0	1	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0033	2058	1	0	1	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0034	2058	1	1	0	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0035	2058	1	0	0	0	1	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	c0036	2058	1	0	0	0	0	1	copy fasta	UBC	chr12	124906646	124919650
UBD_chr6_29550515_29564732	0/1	c0001	498	244	46	45	123	5	24	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	c0002	498	103	44	9	45	0	5	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	c0003	498	78	2	20	39	8	9	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	c0004	498	29	2	6	15	2	4	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	c0005	498	5	0	4	0	1	0	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	c0006	498	1	1	0	0	0	0	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	c0007	498	1	1	0	0	0	0	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	c0008	498	1	0	0	0	0	1	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	c0009	498	1	0	0	0	0	1	copy fasta	UBD	chr6	29550515	29564732
UBE2A_chrX_119569563_119589423	1/1	c0001	459	333	80	63	145	11	32	copy fasta	UBE2A	chrX	119569563	119589423
UBE2B_chr5_134366569_134397108	1/1	c0001	459	281	88	61	86	16	28	copy fasta	UBE2B	chr5	134366569	134397108
UBE2B_chr5_134366569_134397108	0/0	c0002	459	1	0	1	0	0	0	copy fasta	UBE2B	chr5	134366569	134397108
UBE2C_chr20_45807644_45821952	1/1	c0001	540	405	96	74	175	18	40	copy fasta	UBE2C	chr20	45807644	45821952
UBE2C_chr20_45807644_45821952	0/0	c0002	540	28	0	0	22	0	6	copy fasta	UBE2C	chr20	45807644	45821952
UBE2C_chr20_45807644_45821952	0/0	c0003	540	3	0	0	3	0	0	copy fasta	UBE2C	chr20	45807644	45821952
UBE2D1_chr10_58330006_58375748	1/1	c0001	444	391	90	72	178	10	39	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	c0002	444	1	0	0	0	0	1	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D2_chr5_139556339_139633434	1/1	c0001	444	226	74	46	56	16	32	copy fasta	UBE2D2	chr5	139556339	139633434
UBE2D3_chr4_102789383_102832551	1/1	c0001	444	368	84	58	168	14	42	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D4_chr7_43921436_43961136	1/1	c0001	444	380	92	66	170	12	38	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	c0002	444	8	0	6	0	0	2	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2E1_chr3_23800955_23896640	1/1	c0001	582	347	88	69	139	11	38	copy fasta	UBE2E1	chr3	23800955	23896640
UBE2E1_chr3_23800955_23896640	0/0	c0002	582	12	0	10	0	0	2	copy fasta	UBE2E1	chr3	23800955	23896640
UBE2E1_chr3_23800955_23896640	0/0	c0003	582	9	0	0	3	0	6	copy fasta	UBE2E1	chr3	23800955	23896640
UBE2E1_chr3_23800955_23896640	0/0	c0004	582	2	0	1	0	1	0	copy fasta	UBE2E1	chr3	23800955	23896640
UBE2E2_chr3_23198327_23596794	0/0	c0001	606	334	75	64	155	10	30	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	c0002	606	1	1	0	0	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	c0003	606	1	0	0	1	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E3_chr2_180975605_181068425	1/1	c0001	624	337	96	58	123	16	42	copy fasta	UBE2E3	chr2	180975605	181068425
UBE2E3_chr2_180975605_181068425	0/0	c0002	624	1	0	0	1	0	0	copy fasta	UBE2E3	chr2	180975605	181068425
UBE2F_chr2_237962014_238047782	1/0	c0001	558	324	83	58	140	10	32	copy fasta	UBE2F	chr2	237962014	238047782
UBE2F_chr2_237962014_238047782	0/1	c0002	558	39	0	4	26	2	6	copy fasta	UBE2F	chr2	237962014	238047782
UBE2F_chr2_237962014_238047782	0/0	c0003	558	5	5	0	0	0	0	copy fasta	UBE2F	chr2	237962014	238047782
UBE2G1_chr17_4264259_4371675	1/1	c0001	513	272	88	42	106	10	24	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G2_chr21_44763580_44806820	1/1	c0001	498	360	86	68	144	18	42	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	c0002	498	4	4	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	c0003	498	3	3	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	c0004	498	1	1	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820