JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBE2H_chr7_129825732_129957960	1/0	c0001	552	273	82	56	88	8	38	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/1	c0002	552	13	1	3	4	2	2	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	c0003	552	3	1	2	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	c0004	552	1	0	1	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2I_chr16_1304636_1332017	1/1	c0001	477	312	78	57	126	15	34	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	c0002	477	52	18	17	6	3	8	copy fasta	UBE2I	chr16	1304636	1332017
UBE2J1_chr6_89321625_89357722	0/1	c0001	957	299	84	40	132	7	35	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	1/0	c0002	957	99	11	30	41	7	9	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	c0003	957	8	0	0	8	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	c0004	942	1	0	0	1	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	c0005	957	1	0	0	1	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	c0006	957	1	1	0	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	c0007	957	1	0	0	1	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J2_chr1_1248912_1278854	1/1	c0001	780	307	69	52	136	12	36	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	c0002	780	8	8	0	0	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	c0003	780	6	0	4	2	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	c0004	780	1	0	1	0	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	c0005	780	1	0	1	0	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	c0006	780	1	1	0	0	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2K_chr4_39693136_39787792	1/1	c0001	603	335	91	50	138	14	40	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	c0002	603	1	1	0	0	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2L3_chr22_21562714_21629034	1/1	c0001	465	340	77	53	158	12	38	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	c0002	465	11	10	1	0	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	c0003	465	1	1	0	0	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L5_chr13_30417493_30434758	1/0	c0001	465	296	72	60	125	11	27	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/1	c0002	465	133	22	22	62	5	21	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	c0003	465	1	0	0	1	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L6_chr11_57546662_57572672	1/1	c0001	462	365	92	72	148	16	35	copy fasta	UBE2L6	chr11	57546662	57572672
UBE2L6_chr11_57546662_57572672	0/0	c0002	462	2	0	0	1	0	1	copy fasta	UBE2L6	chr11	57546662	57572672
UBE2L6_chr11_57546662_57572672	0/0	c0003	462	1	0	0	1	0	0	copy fasta	UBE2L6	chr11	57546662	57572672
UBE2M_chr19_58550712_58563611	0/1	c0001	552	380	65	66	193	18	37	copy fasta	UBE2M	chr19	58550712	58563611
UBE2M_chr19_58550712_58563611	0/0	c0002	552	27	23	1	2	0	1	copy fasta	UBE2M	chr19	58550712	58563611
UBE2M_chr19_58550712_58563611	0/0	c0003	552	1	0	0	1	0	0	copy fasta	UBE2M	chr19	58550712	58563611
UBE2M_chr19_58550712_58563611	0/0	c0004	552	1	0	1	0	0	0	copy fasta	UBE2M	chr19	58550712	58563611
UBE2N_chr12_93400684_93446947	1/1	c0001	459	372	90	74	162	16	28	copy fasta	UBE2N	chr12	93400684	93446947
UBE2O_chr17_76384456_76458152	1/0	c0001	3879	187	65	31	67	4	19	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/1	c0002	3879	122	10	23	58	10	20	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	c0003	3879	28	0	2	23	0	3	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	c0004	3879	6	6	0	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	c0005	3879	4	4	0	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	c0006	3879	2	2	0	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	c0007	3879	2	2	0	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	c0008	3879	1	1	0	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	c0009	3879	1	0	0	1	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	c0010	3879	1	0	0	1	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	c0011	3879	1	0	1	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	c0012	3879	1	1	0	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	c0013	3879	1	0	0	0	0	1	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	c0014	3879	1	0	1	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	c0015	3879	1	0	0	1	0	0	copy fasta	UBE2O	chr17	76384456	76458152