JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBE2O_chr17_76384456_76458152	0/0	c0016	3879	1	0	0	1	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	c0017	3879	1	1	0	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	c0018	3879	1	0	0	0	0	1	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	c0019	3879	1	0	0	1	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	c0020	3879	1	0	0	1	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2Q1_chr1_154543577_154563662	1/1	c0001	1269	362	92	68	140	18	42	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	c0002	1269	2	1	0	1	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	c0003	1269	1	0	0	1	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	c0004	1257	1	1	0	0	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q2_chr15_75838447_75906078	1/1	c0001	1128	347	77	57	163	11	37	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	c0002	1128	2	0	0	2	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	c0003	1128	1	1	0	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	c0004	1128	1	0	0	0	1	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	c0005	1128	1	0	1	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	c0006	1128	1	1	0	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	c0007	1128	1	0	0	0	0	1	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	c0008	832	1	0	0	1	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	c0009	1128	1	1	0	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2QL1_chr5_6443859_6501723	1/1	c0001	486	340	94	76	116	12	40	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2R2_chr9_33812160_33925399	1/1	c0001	717	366	86	66	150	16	46	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2S_chr19_55394745_55412788	0/0	c0001	669	184	44	41	59	13	27	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	1/1	c0002	669	141	34	27	57	3	18	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	c0003	669	8	1	4	0	2	1	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	c0004	669	5	0	0	4	0	1	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	c0005	669	5	4	1	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	c0006	669	5	5	0	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	c0007	669	4	3	1	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	c0008	669	2	0	0	1	0	1	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	c0009	669	1	1	0	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	c0010	669	1	1	0	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	c0011	669	1	0	0	1	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	c0012	669	1	1	0	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	c0013	669	1	0	0	1	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	c0014	669	1	0	0	1	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2T_chr1_202326657_202346936	1/1	c0001	594	214	56	33	95	7	21	copy fasta	UBE2T	chr1	202326657	202346936
UBE2T_chr1_202326657_202346936	0/0	c0002	594	155	38	35	58	9	15	copy fasta	UBE2T	chr1	202326657	202346936
UBE2T_chr1_202326657_202346936	0/0	c0003	594	1	0	0	1	0	0	copy fasta	UBE2T	chr1	202326657	202346936
UBE2U_chr1_64198623_64272368	1/1	c0001	954	280	53	65	116	10	34	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	c0002	954	14	13	1	0	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	c0003	954	13	10	3	0	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	c0004	954	11	11	0	0	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	c0005	954	3	2	1	0	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	c0006	954	2	1	1	0	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	c0007	954	2	2	0	0	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	c0008	954	2	2	0	0	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	c0009	954	1	1	0	0	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	c0010	954	1	1	0	0	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	c0011	954	1	0	1	0	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2V1_chr20_50076124_50118150	1/1	c0001	444	394	80	70	178	18	46	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	c0002	444	2	0	0	2	0	0	copy fasta	UBE2V1	chr20	50076124	50118150