JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBE2V1_chr20_50076124_50118150	0/0	c0003	444	1	1	0	0	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	c0004	444	1	1	0	0	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V2_chr8_48003431_48069708	1/1	c0001	438	242	82	48	74	8	28	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2W_chr8_73781219_73883862	1/1	c0001	456	266	78	46	106	10	24	copy fasta	UBE2W	chr8	73781219	73883862
UBE2Z_chr17_48903407_48934056	0/0	c0001	1065	201	49	36	84	7	25	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	1/1	c0002	1065	121	37	28	41	3	10	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	0/0	c0003	1065	6	0	0	1	0	5	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	0/0	c0004	1065	1	1	0	0	0	0	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	0/0	c0005	1065	1	1	0	0	0	0	copy fasta	UBE2Z	chr17	48903407	48934056
UBE3A_chr15_25328728_25444024	1/1	c0001	2619	269	73	36	116	10	32	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	c0002	2619	10	9	1	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	c0003	2619	10	9	1	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	c0004	2619	5	5	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	c0005	2619	4	0	2	0	0	2	copy fasta	UBE3A	chr15	25328728	25444024
UBE3B_chr12_109472634_109541702	1/0	c0001	3207	142	22	26	67	6	20	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/1	c0002	3207	119	39	25	33	9	12	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	c0003	3207	38	16	7	14	1	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	c0004	3207	13	5	0	6	0	2	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	c0005	3207	2	0	2	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	c0006	3207	2	2	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	c0007	3207	2	2	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	c0008	3207	2	1	1	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	c0009	3207	1	1	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	c0010	3207	1	0	0	0	0	1	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	c0011	3207	1	0	0	1	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	c0012	3207	1	0	1	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	c0013	3207	1	0	0	0	0	1	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	c0014	3207	1	0	0	1	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	c0015	3207	1	0	0	1	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	c0016	3207	1	0	0	1	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3C_chr7_157133926_157274370	0/0	c0001	3252	137	47	22	57	3	8	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	1/1	c0002	3252	124	20	31	53	3	15	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	c0003	3252	28	13	3	11	0	1	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	c0004	3252	10	0	0	7	0	3	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	c0005	3252	7	0	4	1	0	2	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	c0006	3252	2	2	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	c0007	3252	2	2	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	c0008	3252	1	1	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	c0009	3252	1	0	0	1	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	c0010	3252	1	1	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	c0011	3252	1	0	1	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	c0012	3252	1	1	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	c0013	3252	1	0	1	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	c0014	3252	1	1	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	c0015	3252	1	0	0	1	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	c0016	3252	1	0	0	1	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	c0017	3252	1	0	0	0	0	1	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	c0018	3252	1	0	0	1	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	c0019	3252	1	0	0	1	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3D_chr6_82887390_83070841	1/1	c0001	1170	132	53	24	32	5	16	copy fasta	UBE3D	chr6	82887390	83070841