JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBE3D_chr6_82887390_83070841	0/0	c0002	1170	48	11	8	20	2	7	copy fasta	UBE3D	chr6	82887390	83070841
UBE3D_chr6_82887390_83070841	0/0	c0003	1170	2	1	0	1	0	0	copy fasta	UBE3D	chr6	82887390	83070841
UBE3D_chr6_82887390_83070841	0/0	c0004	1170	1	0	0	0	0	1	copy fasta	UBE3D	chr6	82887390	83070841
UBE3D_chr6_82887390_83070841	0/0	c0005	1170	1	1	0	0	0	0	copy fasta	UBE3D	chr6	82887390	83070841
UBE3D_chr6_82887390_83070841	0/0	c0006	1170	1	0	0	1	0	0	copy fasta	UBE3D	chr6	82887390	83070841
UBE3D_chr6_82887390_83070841	0/0	c0007	1170	1	0	0	0	1	0	copy fasta	UBE3D	chr6	82887390	83070841
UBE4A_chr11_118354600_118404211	1/1	c0001	3201	310	77	45	136	16	34	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	c0002	3201	2	2	0	0	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	c0003	3201	1	0	1	0	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	c0004	3201	1	1	0	0	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	c0005	3201	1	1	0	0	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	c0006	3201	1	0	0	1	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	c0007	3201	1	1	0	0	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	c0008	3201	1	0	0	1	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	c0009	3201	1	1	0	0	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	c0010	3201	1	1	0	0	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4B_chr1_10027958_10186239	1/0	c0001	3909	86	9	24	35	3	14	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0002	3909	55	29	2	22	0	2	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/1	c0003	3909	25	18	1	0	1	4	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0004	3909	23	8	7	6	0	2	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0005	3909	9	7	2	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0006	3909	4	1	3	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0007	3909	3	3	0	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0008	3909	2	0	0	2	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0009	3909	2	2	0	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0010	3909	1	1	0	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0011	3909	1	0	0	0	0	1	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0012	3909	1	0	0	0	0	1	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0013	3909	1	1	0	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0014	3909	1	1	0	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0015	3909	1	0	1	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0016	3909	1	0	1	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0017	3909	1	1	0	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0018	3909	1	0	1	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0019	3909	1	0	0	1	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0020	3909	1	1	0	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0021	3909	1	0	0	1	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	c0022	3909	1	0	0	1	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBFD1_chr16_23552727_23579389	1/1	c0001	930	365	74	66	161	16	46	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	c0002	930	6	6	0	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	c0003	930	1	1	0	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	c0004	930	1	0	0	1	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	c0005	930	1	1	0	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	c0006	930	1	0	1	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	c0007	930	1	0	1	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBIAD1_chr1_11268198_11293434	1/1	c0001	1017	356	89	62	153	9	41	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	c0002	1017	3	3	0	0	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	c0003	1017	1	0	0	1	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	c0004	1017	1	1	0	0	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	c0005	1017	1	0	0	0	0	1	copy fasta	UBIAD1	chr1	11268198	11293434