JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBIAD1_chr1_11268198_11293434	0/0	c0006	1017	1	1	0	0	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	c0007	1017	1	0	0	0	1	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBL3_chr13_29759371_29855617	1/1	c0001	354	389	88	64	181	14	40	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	c0002	354	2	2	0	0	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	c0003	354	1	0	0	1	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL4A_chrX_154478717_154491615	1/1	c0001	474	304	76	59	122	11	34	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	c0002	474	1	0	1	0	0	0	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	c0003	475	1	0	0	1	0	0	copy fasta	UBL4A	chrX	154478717	154491615
UBL4B_chr1_110107443_110118947	1/1	c0001	525	387	74	70	185	14	42	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	c0002	525	3	3	0	0	0	0	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	c0003	525	2	2	0	0	0	0	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	c0004	525	1	1	0	0	0	0	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	c0005	525	1	1	0	0	0	0	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	c0006	525	1	0	0	1	0	0	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	c0007	525	1	1	0	0	0	0	copy fasta	UBL4B	chr1	110107443	110118947
UBL5_chr19_9822918_9835115	1/1	c0001	222	416	100	80	172	14	48	copy fasta	UBL5	chr19	9822918	9835115
UBL7_chr15_74440977_74466160	1/1	c0001	1143	354	82	54	174	12	30	copy fasta	UBL7	chr15	74440977	74466160
UBL7_chr15_74440977_74466160	0/0	c0002	1143	1	0	0	0	0	1	copy fasta	UBL7	chr15	74440977	74466160
UBL7_chr15_74440977_74466160	0/0	c0003	1143	1	1	0	0	0	0	copy fasta	UBL7	chr15	74440977	74466160
UBL7_chr15_74440977_74466160	0/0	c0004	1143	1	1	0	0	0	0	copy fasta	UBL7	chr15	74440977	74466160
UBL7_chr15_74440977_74466160	0/0	c0005	1143	1	0	0	1	0	0	copy fasta	UBL7	chr15	74440977	74466160
UBL7_chr15_74440977_74466160	0/0	c0006	1143	1	0	0	1	0	0	copy fasta	UBL7	chr15	74440977	74466160
UBL7_chr15_74440977_74466160	0/0	c0007	1143	1	0	1	0	0	0	copy fasta	UBL7	chr15	74440977	74466160
UBL7_chr15_74440977_74466160	0/0	c0008	1143	1	0	0	0	0	1	copy fasta	UBL7	chr15	74440977	74466160
UBL7_chr15_74440977_74466160	0/0	c0009	1143	1	0	1	0	0	0	copy fasta	UBL7	chr15	74440977	74466160
UBLCP1_chr5_159258290_159291036	1/1	c0001	957	381	86	66	171	14	42	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	c0002	957	1	0	0	1	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBN1_chr16_4842481_4887401	1/0	c0001	3405	153	26	28	74	8	16	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/1	c0002	3405	122	12	28	61	5	15	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0003	3405	22	21	1	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0004	3405	22	0	1	15	0	6	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0005	3405	15	8	2	2	3	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0006	3405	8	8	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0007	3405	6	6	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0008	3405	5	5	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0009	3405	3	3	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0010	3405	2	2	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0011	3405	2	0	0	0	0	2	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0012	3405	1	0	1	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0013	3361	1	0	0	1	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0014	3405	1	0	0	1	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0015	3405	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0016	3405	1	0	0	1	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0017	3405	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0018	3405	1	0	0	1	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0019	3405	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0020	3405	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0021	3405	1	0	0	1	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0022	3405	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0023	3405	1	0	0	1	0	0	copy fasta	UBN1	chr16	4842481	4887401