JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBN1_chr16_4842481_4887401	0/0	c0024	3405	1	0	0	0	0	1	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0025	3405	1	0	1	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0026	3405	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	c0027	3405	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN2_chr7_139226237_139313236	1/1	c0001	4044	184	65	25	60	6	26	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	c0002	4044	49	12	9	23	1	4	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	c0003	4044	6	0	1	5	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	c0004	4044	5	5	0	0	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	c0005	4044	3	0	2	0	0	1	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	c0006	4044	2	2	0	0	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	c0007	4044	2	2	0	0	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	c0008	4044	1	1	0	0	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	c0009	4044	1	0	0	0	0	1	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	c0010	4044	1	0	0	0	1	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	c0011	4044	1	1	0	0	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	c0012	4044	1	0	1	0	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	c0013	4044	1	0	0	1	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	c0014	4044	1	1	0	0	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	c0015	4044	1	0	1	0	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	c0016	4044	1	0	1	0	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	c0017	4044	1	1	0	0	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	c0018	4044	1	0	0	1	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBOX5_chr20_3102573_3164865	1/1	c0001	1626	287	66	53	125	8	33	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	c0002	1626	70	16	21	17	3	13	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	c0003	1626	10	1	5	0	4	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	c0004	1626	5	4	0	0	0	1	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	c0005	1626	4	4	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	c0006	1626	2	2	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	c0007	1626	1	1	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	c0008	1626	1	0	0	1	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	c0009	1626	1	0	0	0	0	1	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	c0010	1626	1	0	0	0	1	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	c0011	1626	1	0	0	1	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	c0012	1626	1	0	1	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBP1_chr3_33383336_33445405	0/1	c0001	1623	189	42	32	93	6	15	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	1/0	c0002	1623	150	42	16	68	6	17	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	c0003	1623	11	2	5	0	0	4	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	c0004	1623	1	0	0	1	0	0	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	c0005	1623	1	0	1	0	0	0	copy fasta	UBP1	chr3	33383336	33445405
UBQLN1_chr9_83654968_83712958	0/0	c0001	1770	122	21	16	73	3	9	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	c0002	1770	92	50	15	16	3	8	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	1/0	c0003	1770	66	15	12	21	4	13	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/1	c0004	1770	23	1	8	6	2	5	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	c0005	1770	2	1	0	0	0	1	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	c0006	1770	1	1	0	0	0	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	c0007	1770	1	0	1	0	0	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	c0008	1770	1	1	0	0	0	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN2_chrX_56558627_56572868	1/1	c0001	1875	289	70	57	123	9	28	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN2_chrX_56558627_56572868	0/0	c0002	1875	1	0	1	0	0	0	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN2_chrX_56558627_56572868	0/0	c0003	1874	1	0	1	0	0	0	copy fasta	UBQLN2	chrX	56558627	56572868