JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBQLN2_chrX_56558627_56572868	0/0	c0004	1875	1	0	0	1	0	0	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN2_chrX_56558627_56572868	0/0	c0005	1876	1	0	0	1	0	0	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN3_chr11_5502300_5514957	0/0	c0001	1968	245	48	22	141	5	29	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0002	1968	66	16	2	41	2	5	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/1	c0003	1968	63	3	30	16	6	7	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0004	1968	34	2	12	14	3	3	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0005	1968	8	0	5	2	0	1	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0006	1968	7	3	4	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	1/0	c0007	1968	6	5	0	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0008	1968	6	6	0	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0009	1968	5	4	1	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0010	1968	3	2	1	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0011	1968	2	1	1	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0012	1968	2	0	0	2	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0013	1968	2	0	0	0	0	2	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0014	1968	2	0	0	2	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0015	1968	2	0	1	0	0	1	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0016	1968	2	2	0	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0017	1968	1	1	0	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0018	1968	1	0	1	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0019	1968	1	1	0	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0020	1968	1	0	1	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0021	1968	1	0	0	0	0	1	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0022	1968	1	0	0	1	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0023	1968	1	1	0	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0024	1968	1	0	0	1	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0025	1968	1	0	0	1	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0026	1968	1	0	1	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0027	1968	1	0	0	0	0	1	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0028	1968	1	0	1	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0029	1968	1	0	0	1	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0030	1968	1	1	0	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0031	1968	1	0	0	1	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0032	1968	1	1	0	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0033	1968	1	1	0	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0034	1968	1	0	0	1	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	c0035	1968	1	0	1	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN4_chr1_156030299_156058798	1/1	c0001	1806	188	56	24	79	6	21	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	c0002	1806	123	30	34	29	6	24	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	c0003	1806	2	0	0	0	0	2	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	c0004	1806	2	2	0	0	0	0	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	c0005	1806	2	0	0	0	2	0	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	c0006	1806	1	0	0	0	0	1	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	c0007	1806	1	0	1	0	0	0	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	c0008	1806	1	0	1	0	0	0	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLNL_chr11_5509393_5521699	0/1	c0001	1428	191	34	40	73	10	33	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0002	1428	137	12	22	88	5	10	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0003	1428	42	5	2	32	0	3	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0004	1428	20	0	9	9	1	1	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	1/0	c0005	1428	18	16	1	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699