JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBQLNL_chr11_5509393_5521699	0/0	c0006	1428	8	8	0	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0007	1428	8	6	2	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0008	1428	7	7	0	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0009	1428	5	1	4	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0010	1415	4	2	2	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0011	1428	2	1	1	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0012	1428	2	0	0	1	0	1	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0013	1428	2	2	0	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0014	1428	2	0	0	2	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0015	1428	1	0	1	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0016	1428	1	1	0	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0017	1428	1	0	0	1	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0018	1428	1	0	0	1	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0019	1428	1	0	1	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0020	1428	1	0	0	1	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0021	1428	1	0	0	1	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0022	1428	1	0	0	1	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0023	1428	1	1	0	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0024	1428	1	0	1	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0025	1428	1	1	0	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	c0026	1428	1	1	0	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBR1_chr15_42937897_43111038	1/1	c0001	5250	216	45	28	116	5	20	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0002	5250	25	5	2	13	0	5	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0003	5250	4	0	1	0	3	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0004	5250	3	3	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0005	5250	2	2	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0006	5250	2	2	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0007	5250	2	0	0	2	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0008	5250	2	0	0	2	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0009	5250	2	2	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0010	5250	2	2	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0011	5250	2	2	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0012	5250	1	1	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0013	5250	1	0	0	0	0	1	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0014	5250	1	0	0	1	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0015	5250	1	0	1	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0016	5250	1	1	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0017	5250	1	1	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0018	5250	1	1	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0019	5250	1	1	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0020	5250	1	0	1	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0021	5250	1	1	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0022	5250	1	1	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0023	5250	1	0	1	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0024	5250	1	1	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	c0025	5250	1	1	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR2_chr6_42559029_42698505	0/0	c0001	5268	100	21	14	51	5	9	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0002	5268	77	12	14	48	1	2	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0003	5268	60	18	14	23	1	4	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/1	c0004	5268	55	21	10	14	1	8	copy fasta	UBR2	chr6	42559029	42698505