JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BLTP1_chr4_122147331_122367752	0/0	c0029	15282	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0030	15282	1	0	0	0	0	1	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0031	15282	1	0	1	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0032	15282	1	0	1	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0033	15282	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0034	15282	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0035	15282	1	1	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0036	15282	1	0	0	0	1	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0037	15282	1	1	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0038	15282	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0039	15282	1	0	1	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0040	15531	1	0	1	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0041	15531	1	0	0	0	0	1	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0042	15282	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0043	15282	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0044	15282	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	c0045	15282	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP2_chr17_28609446_28650158	1/1	c0001	6708	228	50	52	101	5	18	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0002	6708	35	7	3	20	1	4	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0003	6708	7	0	0	7	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0004	6708	5	5	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0005	6708	3	3	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0006	6708	3	3	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0007	6708	3	3	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0008	6708	2	2	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0009	6708	2	0	2	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0010	6708	2	0	0	2	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0011	6708	1	0	0	0	0	1	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0012	6708	1	1	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0013	6708	1	0	1	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0014	6708	1	0	0	0	0	1	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0015	6708	1	0	1	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0016	6708	1	0	0	0	0	1	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0017	6708	1	0	1	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0018	6708	1	0	1	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0019	6708	1	0	0	0	0	1	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0020	6708	1	1	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0021	6708	1	1	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0022	6708	1	1	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0023	6708	1	1	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0024	6708	1	1	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0025	6708	1	1	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0026	6708	1	0	1	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0027	6708	1	0	1	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0028	6708	1	1	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0029	6708	1	0	1	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	c0030	6708	1	1	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP3A_chr6_34787083_34882514	1/0	c0001	4323	126	21	24	57	7	16	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0002	4323	50	3	4	41	0	2	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0003	4323	43	12	10	18	1	2	copy fasta	BLTP3A	chr6	34787083	34882514