JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBR2_chr6_42559029_42698505	0/0	c0005	5268	12	2	4	0	2	4	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0006	5268	8	1	1	1	0	5	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0007	5268	4	0	0	4	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0008	5268	3	3	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0009	5268	3	3	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0010	5268	3	3	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0011	5268	2	0	0	0	0	2	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0012	5268	2	1	0	1	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0013	5268	2	2	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	1/0	c0014	5268	1	0	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0015	5268	1	0	0	1	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0016	5268	1	0	0	1	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0017	5268	1	0	1	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0018	5268	1	1	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0019	5268	1	1	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0020	5268	1	0	0	1	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0021	5268	1	0	0	1	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0022	5268	1	0	0	1	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0023	5268	1	1	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	c0024	5268	1	0	0	1	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR3_chr2_169822454_170089131	0/0	c0001	5667	97	8	20	50	5	14	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0002	5667	76	13	9	40	1	13	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	1/0	c0003	5667	45	28	9	1	4	2	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0004	5667	29	7	1	20	0	1	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0005	5667	20	14	3	3	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0006	5667	16	4	2	5	0	5	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0007	5667	9	9	0	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0008	5667	8	3	4	0	0	1	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0009	5667	5	0	3	2	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0010	5667	4	3	1	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0011	5667	3	0	0	3	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0012	5667	2	0	0	2	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/1	c0013	5667	2	0	1	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0014	5667	1	1	0	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0015	5667	1	1	0	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0016	5667	1	1	0	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0017	5667	1	0	0	1	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0018	5667	1	0	1	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0019	5667	1	0	0	1	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0020	5667	1	0	0	1	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	c0021	5667	1	0	0	1	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR4_chr1_19069510_19215266	0/0	c0001	15552	106	22	24	47	4	9	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	1/0	c0002	15552	64	11	14	26	5	7	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0003	15552	22	16	1	4	0	1	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0004	15552	18	5	11	0	1	1	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0005	15552	17	0	1	15	0	1	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0006	15552	11	0	1	6	0	4	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0007	15552	9	9	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0008	15552	7	7	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0009	15552	5	0	0	5	0	0	copy fasta	UBR4	chr1	19069510	19215266