JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBR4_chr1_19069510_19215266	0/0	c0010	15552	5	0	0	5	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/1	c0011	15552	5	0	2	0	0	2	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0012	15552	3	3	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0013	15552	3	3	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0014	15552	2	0	0	0	0	2	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0015	15552	2	0	0	2	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0016	15552	2	0	0	2	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0017	15552	2	0	0	2	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0018	15552	2	1	1	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0019	15552	2	0	0	0	0	2	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0020	15552	2	0	0	2	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0021	15552	2	0	0	2	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0022	15552	2	2	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0023	15552	1	0	0	1	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0024	15552	1	0	1	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0025	15552	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0026	15552	1	0	0	1	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0027	15552	1	0	0	1	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0028	15552	1	0	0	1	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0029	15552	1	0	0	0	0	1	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0030	15552	1	0	1	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0031	15552	1	0	0	0	0	1	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0032	15552	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0033	15552	1	0	0	0	0	1	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0034	15552	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0035	15552	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0036	15552	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0037	15552	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0038	15552	1	0	0	0	0	1	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0039	15552	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0040	15552	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0041	15552	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0042	15552	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0043	15552	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0044	15552	1	0	0	1	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0045	15552	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0046	15552	1	0	1	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0047	15552	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0048	15552	1	0	0	0	0	1	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0049	15552	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0050	15552	1	0	0	1	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0051	15552	1	0	0	1	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0052	15552	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0053	15552	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0054	15552	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	c0055	15552	1	0	0	1	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR5_chr8_102247273_102417700	1/1	c0001	8400	270	70	52	111	8	27	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	c0002	8400	14	0	12	0	1	1	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	c0003	8400	9	0	1	6	2	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	c0004	8400	8	6	0	2	0	0	copy fasta	UBR5	chr8	102247273	102417700