JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBR5_chr8_102247273_102417700	0/0	c0005	8400	5	5	0	0	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	c0006	8400	5	4	1	0	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	c0007	8400	3	0	0	3	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	c0008	8400	3	0	1	0	1	1	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	c0009	8400	1	0	1	0	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	c0010	8400	1	0	0	0	0	1	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	c0011	8400	1	1	0	0	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	c0012	8400	1	1	0	0	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	c0013	8400	1	0	0	1	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	c0014	8400	1	1	0	0	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	c0015	8400	1	0	0	0	1	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	c0016	8400	1	0	0	0	1	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	c0017	8400	1	0	0	1	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	c0018	8400	1	0	0	1	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	c0019	8400	1	0	0	1	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR7_chr14_93202256_93234215	0/1	c0001	1278	350	79	65	145	17	43	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	c0002	1278	52	14	14	20	1	3	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	c0003	1278	2	0	1	0	0	1	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	c0004	1278	2	0	0	2	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	c0005	1278	1	1	0	0	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	c0006	1278	1	0	0	0	0	1	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	c0007	1278	1	0	0	1	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBTD1_chr10_97493924_97576206	1/1	c0001	684	312	85	66	121	10	28	copy fasta	UBTD1	chr10	97493924	97576206
UBTD1_chr10_97493924_97576206	0/0	c0002	684	1	1	0	0	0	0	copy fasta	UBTD1	chr10	97493924	97576206
UBTD1_chr10_97493924_97576206	0/0	c0003	684	1	0	0	1	0	0	copy fasta	UBTD1	chr10	97493924	97576206
UBTD2_chr5_172204646_172288764	1/1	c0001	705	362	87	72	155	11	35	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	c0002	705	7	0	0	6	0	1	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	c0003	705	2	2	0	0	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	c0004	705	1	0	0	0	1	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	c0005	705	1	0	0	1	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	c0006	705	1	1	0	0	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTFL1_chr11_90080950_90092131	1/1	c0001	1182	176	28	35	79	12	20	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	c0002	1183	27	8	6	1	1	11	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	c0003	1183	24	3	2	14	0	5	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	c0004	1182	24	2	6	12	2	2	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	c0005	1183	13	0	3	4	3	3	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	c0006	1182	7	2	1	4	0	0	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	c0007	1183	1	1	0	0	0	0	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	c0008	1182	1	0	0	1	0	0	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	c0009	1172	1	0	1	0	0	0	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	c0010	1182	1	0	0	0	0	1	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	c0011	1182	1	0	0	1	0	0	copy fasta	UBTFL1	chr11	90080950	90092131
UBTF_chr17_44200040_44224675	1/1	c0001	2295	188	27	38	74	12	35	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	c0002	2295	151	38	22	80	4	7	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	c0003	2295	20	19	1	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	c0004	2295	5	5	0	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	c0005	2295	2	1	1	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	c0006	2295	1	0	0	1	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	c0007	2295	1	1	0	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	c0008	2295	1	0	1	0	0	0	copy fasta	UBTF	chr17	44200040	44224675