JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBTF_chr17_44200040_44224675	0/0	c0009	2280	1	0	0	1	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	c0010	2295	1	0	1	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	c0011	2295	1	1	0	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBXN10_chr1_20181096_20201050	1/1	c0001	843	403	83	76	183	14	45	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	c0002	864	3	0	0	3	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	c0003	843	1	1	0	0	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	c0004	843	1	0	0	0	0	1	copy fasta	UBXN10	chr1	20181096	20201050
UBXN11_chr1_26277282_26311636	0/0	c0001	1539	109	23	32	33	9	12	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0002	1587	70	6	5	54	0	5	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/1	c0003	1533	66	20	11	25	1	8	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0004	1611	21	0	10	11	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0005	1539	20	6	4	1	6	3	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0006	1539	14	0	0	14	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0007	1533	7	6	1	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	1/0	c0008	1563	7	2	0	2	0	2	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0009	1539	7	1	0	5	0	1	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0010	1539	5	0	0	5	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0011	1539	4	4	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0012	1551	3	0	0	3	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0013	1539	3	3	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0014	1539	2	2	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0015	1527	2	2	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0016	1539	2	0	0	0	0	2	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0017	1533	2	0	2	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0018	1515	2	2	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0019	1587	2	0	0	2	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0020	1563	2	1	1	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0021	1539	1	1	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0022	1600	1	0	0	1	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0023	1587	1	0	0	0	0	1	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0024	1581	1	0	0	1	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0025	1605	1	0	0	1	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0026	1589	1	0	0	1	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0027	1605	1	0	1	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0028	1647	1	0	1	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0029	1587	1	0	0	0	0	1	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0030	1533	1	0	0	0	0	1	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0031	1539	1	0	1	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0032	1539	1	1	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0033	1539	1	1	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0034	1515	1	1	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0035	1535	1	0	0	1	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0036	1533	1	1	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0037	1533	1	0	1	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0038	1557	1	0	1	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0039	1539	1	0	1	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	c0040	1533	1	1	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN1_chr11_62671500_62684073	1/1	c0001	894	324	90	69	116	10	37	copy fasta	UBXN1	chr11	62671500	62684073
UBXN1_chr11_62671500_62684073	0/0	c0002	894	2	0	0	2	0	0	copy fasta	UBXN1	chr11	62671500	62684073
UBXN1_chr11_62671500_62684073	0/0	c0003	894	2	0	0	2	0	0	copy fasta	UBXN1	chr11	62671500	62684073