JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBXN1_chr11_62671500_62684073	0/0	c0004	894	2	2	0	0	0	0	copy fasta	UBXN1	chr11	62671500	62684073
UBXN1_chr11_62671500_62684073	0/0	c0005	894	1	0	1	0	0	0	copy fasta	UBXN1	chr11	62671500	62684073
UBXN1_chr11_62671500_62684073	0/0	c0006	894	1	0	0	0	0	1	copy fasta	UBXN1	chr11	62671500	62684073
UBXN2A_chr2_23935463_24009909	1/1	c0001	780	246	67	54	74	16	33	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	c0002	780	1	0	0	0	0	1	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	c0003	780	1	1	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	c0004	780	1	1	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	c0005	780	1	1	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2B_chr8_58406361_58456501	1/1	c0001	996	305	71	44	144	10	34	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	c0002	996	99	13	24	51	4	7	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	c0003	996	4	4	0	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	c0004	996	2	2	0	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	c0005	996	2	0	0	2	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	c0006	965	1	0	0	1	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	c0007	996	1	0	0	0	0	1	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN4_chr2_135736855_135790056	1/1	c0001	1527	270	76	41	120	4	27	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	c0002	1527	62	10	17	28	2	5	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	c0003	1527	25	0	2	22	0	1	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	c0004	1527	8	0	3	3	0	2	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	c0005	1527	2	0	0	2	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	c0006	1527	1	0	0	1	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	c0007	1527	1	0	1	0	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	c0008	1527	1	0	0	0	0	1	copy fasta	UBXN4	chr2	135736855	135790056
UBXN6_chr19_4440006_4462794	0/1	c0001	1326	186	32	29	106	3	15	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	c0002	1326	114	24	19	43	9	19	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	c0003	1326	61	9	30	7	5	10	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	1/0	c0004	1326	36	24	3	6	0	2	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	c0005	1326	6	6	0	0	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	c0006	1326	2	0	0	2	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	c0007	1326	2	0	0	2	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	c0008	1326	2	2	0	0	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	c0009	1326	1	0	0	1	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	c0010	1326	1	0	0	0	0	1	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	c0011	1326	1	1	0	0	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	c0012	1326	1	0	0	1	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	c0013	1326	1	0	0	0	1	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	c0014	1326	1	1	0	0	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	c0015	1326	1	0	0	1	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	c0016	1326	1	1	0	0	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	c0017	1326	1	0	0	0	0	1	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	c0018	1326	1	0	1	0	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	c0019	1326	1	0	0	1	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN7_chr3_196342662_196437427	1/1	c0001	1470	260	89	56	68	16	29	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	c0002	1470	10	0	0	6	0	4	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	c0003	1470	2	2	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	c0004	1470	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	c0005	1470	1	0	0	0	0	1	copy fasta	UBXN7	chr3	196342662	196437427
UBXN8_chr8_30739164_30772006	0/1	c0001	813	260	78	56	95	8	22	copy fasta	UBXN8	chr8	30739164	30772006
UBXN8_chr8_30739164_30772006	0/0	c0002	813	10	10	0	0	0	0	copy fasta	UBXN8	chr8	30739164	30772006
UBXN8_chr8_30739164_30772006	0/0	c0003	813	2	2	0	0	0	0	copy fasta	UBXN8	chr8	30739164	30772006