JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UBXN8_chr8_30739164_30772006	1/0	c0004	813	1	0	0	0	0	0	copy fasta	UBXN8	chr8	30739164	30772006
UBXN8_chr8_30739164_30772006	0/0	c0005	813	1	0	0	1	0	0	copy fasta	UBXN8	chr8	30739164	30772006
UCHL1_chr4_41251928_41273455	1/1	c0001	672	303	90	53	116	13	29	copy fasta	UCHL1	chr4	41251928	41273455
UCHL1_chr4_41251928_41273455	0/0	c0002	672	112	2	19	79	1	11	copy fasta	UCHL1	chr4	41251928	41273455
UCHL1_chr4_41251928_41273455	0/0	c0003	672	6	4	2	0	0	0	copy fasta	UCHL1	chr4	41251928	41273455
UCHL1_chr4_41251928_41273455	0/0	c0004	672	1	0	0	1	0	0	copy fasta	UCHL1	chr4	41251928	41273455
UCHL1_chr4_41251928_41273455	0/0	c0005	672	1	0	0	1	0	0	copy fasta	UCHL1	chr4	41251928	41273455
UCHL1_chr4_41251928_41273455	0/0	c0006	672	1	0	0	1	0	0	copy fasta	UCHL1	chr4	41251928	41273455
UCHL3_chr13_75544791_75611020	1/1	c0001	693	325	92	66	119	8	38	copy fasta	UCHL3	chr13	75544791	75611020
UCHL3_chr13_75544791_75611020	0/0	c0002	693	1	0	0	1	0	0	copy fasta	UCHL3	chr13	75544791	75611020
UCHL5_chr1_193007254_193064360	1/1	c0001	987	307	78	45	140	12	30	copy fasta	UCHL5	chr1	193007254	193064360
UCHL5_chr1_193007254_193064360	0/0	c0002	987	1	0	1	0	0	0	copy fasta	UCHL5	chr1	193007254	193064360
UCK1_chr9_131518801_131536263	0/1	c0001	834	334	51	65	157	15	45	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	1/0	c0002	834	79	39	9	24	3	3	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	c0003	834	5	5	0	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	c0004	834	2	2	0	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	c0005	834	1	1	0	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	c0006	834	1	0	1	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	c0007	834	1	0	1	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	c0008	834	1	0	0	1	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK2_chr1_165822614_165916618	0/0	c0001	786	295	88	57	105	13	32	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	c0002	786	24	1	5	15	1	2	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	c0003	786	1	1	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCKL1_chr20_63934829_63961416	1/1	c0001	1647	317	62	70	121	14	48	copy fasta	UCKL1	chr20	63934829	63961416
UCKL1_chr20_63934829_63961416	0/0	c0002	1647	32	31	1	0	0	0	copy fasta	UCKL1	chr20	63934829	63961416
UCKL1_chr20_63934829_63961416	0/0	c0003	1647	1	0	0	1	0	0	copy fasta	UCKL1	chr20	63934829	63961416
UCKL1_chr20_63934829_63961416	0/0	c0004	1647	1	0	0	1	0	0	copy fasta	UCKL1	chr20	63934829	63961416
UCKL1_chr20_63934829_63961416	0/0	c0005	1628	1	0	0	1	0	0	copy fasta	UCKL1	chr20	63934829	63961416
UCKL1_chr20_63934829_63961416	0/0	c0006	1647	1	0	1	0	0	0	copy fasta	UCKL1	chr20	63934829	63961416
UCKL1_chr20_63934829_63961416	0/0	c0007	1647	1	1	0	0	0	0	copy fasta	UCKL1	chr20	63934829	63961416
UCKL1_chr20_63934829_63961416	0/0	c0008	1647	1	1	0	0	0	0	copy fasta	UCKL1	chr20	63934829	63961416
UCKL1_chr20_63934829_63961416	0/0	c0009	1647	1	1	0	0	0	0	copy fasta	UCKL1	chr20	63934829	63961416
UCMA_chr10_13216766_13239374	0/1	c0001	417	372	60	77	187	16	31	copy fasta	UCMA	chr10	13216766	13239374
UCMA_chr10_13216766_13239374	1/0	c0002	417	86	31	7	32	2	13	copy fasta	UCMA	chr10	13216766	13239374
UCMA_chr10_13216766_13239374	0/0	c0003	213	2	2	0	0	0	0	copy fasta	UCMA	chr10	13216766	13239374
UCMA_chr10_13216766_13239374	0/0	c0004	417	1	0	0	1	0	0	copy fasta	UCMA	chr10	13216766	13239374
UCMA_chr10_13216766_13239374	0/0	c0005	417	1	1	0	0	0	0	copy fasta	UCMA	chr10	13216766	13239374
UCMA_chr10_13216766_13239374	0/0	c0006	417	1	1	0	0	0	0	copy fasta	UCMA	chr10	13216766	13239374
UCMA_chr10_13216766_13239374	0/0	c0007	417	1	1	0	0	0	0	copy fasta	UCMA	chr10	13216766	13239374
UCN2_chr3_48556718_48568781	1/1	c0001	339	301	80	75	100	12	32	copy fasta	UCN2	chr3	48556718	48568781
UCN2_chr3_48556718_48568781	0/0	c0002	339	1	0	1	0	0	0	copy fasta	UCN2	chr3	48556718	48568781
UCN3_chr10_5359966_5379692	1/0	c0001	486	233	63	41	98	11	19	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/1	c0002	486	230	27	42	128	5	27	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	c0003	486	1	0	0	1	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	c0004	486	1	0	1	0	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	c0005	486	1	0	0	1	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	c0006	486	1	1	0	0	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	c0007	486	1	1	0	0	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN_chr2_27302400_27313445	1/1	c0001	375	319	90	69	106	12	40	copy fasta	UCN	chr2	27302400	27313445
UCN_chr2_27302400_27313445	0/0	c0002	375	1	0	1	0	0	0	copy fasta	UCN	chr2	27302400	27313445