JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UCN_chr2_27302400_27313445	0/0	c0003	375	1	0	0	1	0	0	copy fasta	UCN	chr2	27302400	27313445
UCN_chr2_27302400_27313445	0/0	c0004	375	1	0	0	1	0	0	copy fasta	UCN	chr2	27302400	27313445
UCP1_chr4_140554431_140573961	1/1	c0001	924	380	90	63	185	9	31	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	c0002	924	32	0	9	16	1	6	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	c0003	924	4	4	0	0	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	c0004	924	2	0	0	2	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	c0005	924	1	1	0	0	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	c0006	924	1	0	0	1	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	c0007	924	1	1	0	0	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	c0008	924	1	0	0	0	0	1	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	c0009	924	1	0	0	1	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	c0010	924	1	0	0	1	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP2_chr11_73969672_73987843	0/0	c0001	930	208	44	37	103	9	15	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	1/1	c0002	930	198	43	39	80	7	27	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	c0003	930	4	4	0	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	c0004	930	2	2	0	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	c0005	930	2	0	0	2	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	c0006	930	1	1	0	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	c0007	930	1	0	0	1	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	c0008	930	1	1	0	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	c0009	930	1	0	0	1	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	c0010	930	1	0	0	1	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	c0011	930	1	1	0	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP3_chr11_73995277_74014085	1/1	c0001	939	163	7	34	91	7	22	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0002	939	131	29	32	51	6	13	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0003	939	107	37	7	51	3	9	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0004	939	14	14	0	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0005	939	10	2	1	7	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0006	939	3	2	1	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0007	939	2	0	0	2	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0008	939	2	2	0	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0009	939	2	2	0	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0010	939	1	1	0	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0011	939	1	1	0	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0012	939	1	0	0	1	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0013	939	1	0	0	1	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0014	939	1	0	0	0	0	1	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0015	939	1	0	0	1	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0016	939	1	0	1	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0017	939	1	0	0	0	0	1	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0018	939	1	0	1	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0019	939	1	1	0	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0020	939	1	0	0	1	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	c0021	939	1	0	1	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UEVLD_chr11_18524609_18593734	1/1	c0001	1416	238	70	52	84	8	22	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	c0002	1416	82	1	13	59	1	8	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	c0003	1416	55	4	5	39	1	6	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	c0004	1416	10	10	0	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	c0005	1416	7	6	0	1	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	c0006	1416	2	2	0	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734