JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UEVLD_chr11_18524609_18593734	0/0	c0007	1416	1	0	1	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	c0008	1416	1	1	0	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	c0009	1416	1	1	0	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	c0010	1416	1	0	1	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	c0011	1416	1	0	0	1	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	c0012	1416	1	1	0	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UFC1_chr1_161148978_161163856	1/1	c0001	504	367	77	58	182	16	32	copy fasta	UFC1	chr1	161148978	161163856
UFC1_chr1_161148978_161163856	0/0	c0002	504	1	1	0	0	0	0	copy fasta	UFC1	chr1	161148978	161163856
UFD1_chr22_19444911_19484193	1/1	c0001	924	387	80	65	199	12	29	copy fasta	UFD1	chr22	19444911	19484193
UFD1_chr22_19444911_19484193	0/0	c0002	924	8	4	3	0	0	1	copy fasta	UFD1	chr22	19444911	19484193
UFD1_chr22_19444911_19484193	0/0	c0003	924	5	5	0	0	0	0	copy fasta	UFD1	chr22	19444911	19484193
UFD1_chr22_19444911_19484193	0/0	c0004	924	1	1	0	0	0	0	copy fasta	UFD1	chr22	19444911	19484193
UFD1_chr22_19444911_19484193	0/0	c0005	924	1	0	0	1	0	0	copy fasta	UFD1	chr22	19444911	19484193
UFL1_chr6_96516806_96560276	1/0	c0001	2385	196	51	40	77	5	22	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/1	c0002	2385	143	25	19	76	6	16	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	c0003	2385	8	2	4	0	2	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	c0004	2385	7	0	0	7	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	c0005	2385	6	0	0	6	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	c0006	2385	5	0	0	5	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	c0007	2385	4	0	0	4	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	c0008	2385	2	2	0	0	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	c0009	2385	2	2	0	0	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	c0010	2385	2	2	0	0	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	c0011	2385	2	1	1	0	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	c0012	2385	1	0	0	0	1	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	c0013	2385	1	0	0	0	0	1	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	c0014	2385	1	0	0	1	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	c0015	2385	1	1	0	0	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	c0016	2385	1	0	0	0	0	1	copy fasta	UFL1	chr6	96516806	96560276
UFM1_chr13_38344851_38368619	1/1	c0001	258	288	100	44	98	14	30	copy fasta	UFM1	chr13	38344851	38368619
UFSP1_chr7_100883721_100894715	0/0	c0001	429	253	60	33	127	6	27	copy fasta	UFSP1	chr7	100883721	100894715
UFSP1_chr7_100883721_100894715	1/0	c0002	429	126	36	27	42	9	11	copy fasta	UFSP1	chr7	100883721	100894715
UFSP1_chr7_100883721_100894715	0/1	c0003	429	25	2	10	5	1	6	copy fasta	UFSP1	chr7	100883721	100894715
UFSP1_chr7_100883721_100894715	0/0	c0004	429	1	0	0	1	0	0	copy fasta	UFSP1	chr7	100883721	100894715
UFSP1_chr7_100883721_100894715	0/0	c0005	429	1	0	0	1	0	0	copy fasta	UFSP1	chr7	100883721	100894715
UFSP2_chr4_185394537_185430964	1/1	c0001	1410	264	76	46	87	12	41	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	c0002	1410	16	3	1	10	0	2	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	c0003	1410	3	3	0	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	c0004	1410	3	3	0	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	c0005	1410	3	3	0	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	c0006	1410	2	2	0	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	c0007	1410	2	0	2	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	c0008	1410	1	1	0	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	c0009	1410	1	0	0	0	0	1	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	c0010	1410	1	0	0	1	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	c0011	1410	1	0	1	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	c0012	1410	1	0	0	1	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	c0013	1410	1	0	0	1	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	c0014	1410	1	1	0	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UGCG_chr9_111891814_111940369	1/1	c0001	1185	273	54	45	131	14	27	copy fasta	UGCG	chr9	111891814	111940369