JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UGCG_chr9_111891814_111940369	0/0	c0002	1185	126	35	25	52	4	10	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	c0003	1185	18	0	3	14	0	1	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	c0004	1185	4	0	2	0	0	2	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	c0005	1185	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	c0006	1185	1	1	0	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	c0007	1185	1	0	1	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGDH_chr4_39493755_39532439	1/1	c0001	1485	261	48	57	113	8	33	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	c0002	1485	130	42	14	64	3	7	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	c0003	1485	17	1	3	6	4	3	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	c0004	1485	2	0	0	2	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	c0005	1485	1	1	0	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	c0006	1485	1	1	0	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	c0007	1485	1	0	0	0	1	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	c0008	1485	1	0	0	0	0	1	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	c0009	1485	1	0	0	1	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	c0010	1485	1	1	0	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGGT1_chr2_128086200_128200677	0/1	c0001	4668	84	3	22	45	6	7	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0002	4668	78	29	7	31	1	10	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0003	4668	66	4	15	39	2	6	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0004	4668	60	36	7	12	3	2	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0005	4668	13	1	8	0	2	2	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0006	4668	3	0	0	3	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0007	4668	3	3	0	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0008	4668	2	0	0	2	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0009	4668	2	2	0	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0010	4668	2	1	1	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0011	4668	2	2	0	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0012	4668	2	2	0	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0013	4668	1	0	0	0	0	1	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0014	4668	1	0	1	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0015	4668	1	0	0	1	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0016	4668	1	0	0	1	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0017	4668	1	0	0	0	0	1	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0018	4668	1	0	0	1	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0019	4668	1	0	0	0	0	1	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0020	4668	1	0	0	1	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0021	4668	1	1	0	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0022	4668	1	1	0	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0023	4668	1	0	0	1	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0024	4668	1	0	1	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0025	4668	1	1	0	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	c0026	4668	1	0	0	1	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	1/0	c0027	4668	1	0	0	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT2_chr13_95796580_96058401	0/0	c0001	4551	120	23	20	63	4	10	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	1/0	c0002	4551	56	21	12	20	0	2	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0003	4551	50	7	3	32	3	5	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0004	4551	21	2	0	18	0	1	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0005	4551	14	4	1	8	0	1	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0006	4551	11	0	1	5	2	3	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0007	4551	10	9	1	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401