JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UGGT2_chr13_95796580_96058401	0/0	c0008	4551	6	6	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0009	4551	4	3	0	0	1	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0010	4551	3	0	3	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0011	4551	3	0	1	0	0	2	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0012	4551	3	0	2	0	1	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/1	c0013	4551	3	0	1	0	0	1	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0014	4551	2	0	0	2	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0015	4551	2	0	0	2	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0016	4551	2	2	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0017	4551	2	2	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0018	4551	1	0	0	1	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0019	4551	1	1	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0020	4551	1	1	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0021	4551	1	0	0	1	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0022	4551	1	0	0	1	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0023	4551	1	1	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0024	4551	1	1	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0025	4551	1	1	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0026	4551	1	0	0	0	0	1	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0027	4551	1	0	0	0	0	1	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0028	4551	1	0	0	0	0	1	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0029	4551	1	1	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0030	4551	1	0	0	1	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0031	4551	1	0	1	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0032	4551	1	0	0	0	0	1	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0033	4551	1	0	1	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0034	4551	1	1	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0035	4551	1	0	0	0	0	1	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0036	4551	1	0	0	0	1	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	c0037	4551	1	0	1	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGP2_chr2_63836896_63896560	1/1	c0001	1527	327	94	74	102	14	41	copy fasta	UGP2	chr2	63836896	63896560
UGP2_chr2_63836896_63896560	0/0	c0002	1527	3	0	0	0	2	1	copy fasta	UGP2	chr2	63836896	63896560
UGP2_chr2_63836896_63896560	0/0	c0003	1527	2	0	0	0	2	0	copy fasta	UGP2	chr2	63836896	63896560
UGP2_chr2_63836896_63896560	0/0	c0004	1527	2	0	0	2	0	0	copy fasta	UGP2	chr2	63836896	63896560
UGT1A10_chr2_233631448_233778300	1/1	c0001	1593	258	67	47	93	12	37	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	c0002	1593	20	10	2	4	0	4	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	c0003	1593	5	5	0	0	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	c0004	1593	4	4	0	0	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	c0005	1593	2	0	0	2	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	c0006	1593	1	0	1	0	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	c0007	1593	1	0	0	1	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	c0008	1593	1	0	0	0	0	1	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	c0009	1593	1	0	1	0	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	c0010	1593	1	0	0	1	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	c0011	1593	1	0	0	1	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	c0012	1593	1	0	0	1	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	c0013	1593	1	0	0	1	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	c0014	1593	1	0	0	1	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	c0015	1593	1	1	0	0	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	c0016	1593	1	0	0	1	0	0	copy fasta	UGT1A10	chr2	233631448	233778300