JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BLTP3A_chr6_34787083_34882514	0/1	c0004	4323	32	18	5	1	2	5	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0005	4323	9	0	5	1	0	3	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0006	4323	6	0	0	6	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0007	4323	5	5	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0008	4323	5	0	0	5	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0009	4323	4	4	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0010	4323	3	1	2	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0011	4323	3	3	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0012	4323	2	0	0	2	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0013	4323	2	2	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0014	4323	2	0	0	0	0	2	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0015	4323	2	2	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0016	4323	1	0	0	1	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0017	4323	1	0	0	1	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0018	4323	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0019	4323	1	0	0	0	0	1	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0020	4323	1	0	0	1	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0021	4323	1	0	0	0	0	1	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0022	4323	1	0	0	0	0	1	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0023	4323	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0024	4323	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0025	4323	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0026	4323	1	0	1	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0027	4323	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0028	4323	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0029	4323	1	0	0	0	0	1	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0030	4323	1	0	1	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0031	4323	1	0	0	1	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0032	4323	1	0	0	1	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	c0033	4323	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3B_chr12_100032072_100147874	1/1	c0001	4395	99	24	28	28	3	14	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0002	4395	18	5	4	3	2	4	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0003	4395	17	17	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0004	4395	7	6	1	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0005	4395	6	0	3	1	0	2	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0006	4395	5	3	1	0	1	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0007	4395	4	0	4	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0008	4395	4	3	1	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0009	4395	3	0	3	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0010	4395	2	2	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0011	4395	2	2	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0012	4395	2	2	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0013	4395	2	2	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0014	4395	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0015	4395	1	0	1	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0016	4395	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0017	4395	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0018	4395	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0019	4395	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0020	4395	1	0	1	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874