JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UGT1A10_chr2_233631448_233778300	0/0	c0017	1593	1	0	1	0	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	c0018	1593	1	1	0	0	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A1_chr2_233755270_233778300	1/1	c0001	1602	377	96	63	153	17	46	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	c0002	1602	25	0	0	23	1	1	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	c0003	1602	2	0	0	2	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	c0004	1602	2	0	0	2	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	c0005	1602	1	0	0	1	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	c0006	1602	1	0	1	0	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	c0007	1602	1	0	1	0	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	c0008	1602	1	0	1	0	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	c0009	1602	1	0	0	1	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	c0010	1602	1	0	0	0	0	1	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A3_chr2_233724042_233778300	1/1	c0001	1605	132	14	20	68	8	20	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0002	1605	125	51	22	28	5	19	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0003	1605	36	7	10	13	1	5	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0004	1605	11	0	0	11	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0005	1605	8	3	1	2	1	1	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0006	1605	7	7	0	0	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0007	1605	6	0	0	6	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0008	1605	5	5	0	0	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0009	1605	4	4	0	0	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0010	1605	2	0	0	2	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0011	1605	2	0	0	2	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0012	1605	1	0	0	0	0	1	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0013	1605	1	1	0	0	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0014	1605	1	0	0	0	0	1	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0015	1605	1	1	0	0	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0016	1605	1	0	0	0	0	1	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0017	1605	1	0	0	1	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0018	1605	1	0	0	1	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0019	1605	1	1	0	0	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0020	1605	1	0	0	1	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0021	1605	1	0	0	1	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0022	1605	1	0	1	0	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	c0023	1605	1	0	0	0	1	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A4_chr2_233713736_233778300	0/1	c0001	1605	227	66	34	86	12	28	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0002	1605	44	9	8	21	0	6	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	1/0	c0003	1605	17	0	5	2	3	6	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0004	1605	12	12	0	0	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0005	1605	5	3	0	2	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0006	1605	4	0	3	0	0	1	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0007	1605	2	0	0	2	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0008	1605	2	0	0	2	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0009	1605	2	1	0	0	0	1	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0010	1605	2	2	0	0	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0011	1605	1	1	0	0	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0012	1605	1	0	0	1	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0013	1605	1	0	0	1	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0014	1605	1	0	0	1	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0015	1605	1	0	0	0	0	1	copy fasta	UGT1A4	chr2	233713736	233778300