JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UGT1A4_chr2_233713736_233778300	0/0	c0016	1605	1	0	0	1	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0017	1605	1	0	0	1	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0018	1605	1	1	0	0	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0019	1605	1	1	0	0	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0020	1605	1	0	0	1	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0021	1605	1	0	0	0	0	1	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0022	1605	1	1	0	0	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0023	1605	1	0	0	1	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0024	1605	1	0	0	0	1	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	c0025	1605	1	1	0	0	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A5_chr2_233707907_233778300	0/0	c0001	1605	137	67	22	25	6	17	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	1/1	c0002	1605	133	20	20	64	9	18	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	c0003	1605	47	6	8	24	1	8	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	c0004	1605	5	5	0	0	0	0	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	c0005	1605	2	0	0	2	0	0	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	c0006	1605	2	0	0	2	0	0	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	c0007	1605	1	0	0	0	0	1	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	c0008	1605	1	0	0	1	0	0	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	c0009	1605	1	0	0	1	0	0	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	c0010	1605	1	0	0	1	0	0	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A6_chr2_233687890_233778300	1/1	c0001	1599	207	65	33	77	7	23	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	c0002	1599	88	22	13	29	7	17	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	c0003	1599	8	3	1	2	0	2	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	c0004	1599	8	0	0	8	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	c0005	1599	7	7	0	0	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	c0006	1599	4	0	3	0	0	1	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	c0007	1599	2	0	0	2	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	c0008	1599	2	0	0	2	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	c0009	1599	1	0	0	0	0	1	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	c0010	1599	1	0	1	0	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	c0011	1599	1	0	0	1	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	c0012	1599	1	0	1	0	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	c0013	1599	1	0	0	1	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	c0014	1599	1	1	0	0	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A7_chr2_233676901_233778300	1/1	c0001	1593	128	34	18	57	5	12	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	c0002	1593	90	18	17	30	6	19	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	c0003	1593	58	12	10	25	2	9	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	c0004	1593	28	23	1	2	0	2	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	c0005	1593	5	4	0	0	1	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	c0006	1593	2	2	0	0	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	c0007	1593	2	0	0	2	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	c0008	1593	1	0	0	0	0	1	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	c0009	1593	1	1	0	0	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	c0010	1593	1	0	0	1	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	c0011	1593	1	0	0	0	0	1	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	c0012	1593	1	0	1	0	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	c0013	1593	1	0	0	1	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	c0014	1504	1	0	1	0	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A8_chr2_233612633_233778300	1/0	c0001	1593	166	60	28	41	8	28	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/1	c0002	1593	66	1	13	40	2	9	copy fasta	UGT1A8	chr2	233612633	233778300