JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UGT1A8_chr2_233612633_233778300	0/0	c0003	1593	32	20	2	6	0	4	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	c0004	1593	6	0	0	6	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	c0005	1593	5	0	5	0	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	c0006	1593	2	2	0	0	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	c0007	1593	2	1	1	0	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	c0008	1593	2	2	0	0	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	c0009	1593	1	1	0	0	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	c0010	1593	1	0	1	0	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	c0011	1593	1	0	0	0	0	1	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	c0012	1593	1	0	0	1	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	c0013	1593	1	0	0	1	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	c0014	1593	1	0	0	1	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	c0015	1593	1	0	0	1	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	c0016	1593	1	1	0	0	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	c0017	1593	1	0	0	1	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A9_chr2_233666898_233778300	1/1	c0001	1593	297	90	45	102	16	42	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	c0002	1593	4	0	0	4	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	c0003	1593	3	0	3	0	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	c0004	1593	2	0	0	2	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	c0005	1593	1	0	0	0	0	1	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	c0006	1593	1	0	0	1	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	c0007	1593	1	0	1	0	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	c0008	1593	1	0	0	1	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	c0009	1593	1	0	1	0	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	c0010	1593	1	0	0	1	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	c0011	1593	1	0	0	1	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	c0012	1593	1	0	0	0	0	1	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	c0013	1593	1	0	0	1	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	c0014	1593	1	1	0	0	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	c0015	1593	1	1	0	0	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	c0016	1593	1	0	0	1	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT2A1_chr4_69583417_69658247	1/1	c0001	1584	285	47	48	155	9	24	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	c0002	1584	33	23	4	4	1	1	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	c0003	1584	19	2	7	4	1	5	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	c0004	1584	18	1	10	0	3	4	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	c0005	1584	6	6	0	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	c0006	1584	2	0	2	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	c0007	1584	2	0	0	0	0	2	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	c0008	1584	1	0	1	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	c0009	1584	1	0	0	0	0	1	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	c0010	1584	1	0	0	1	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	c0011	1584	1	0	0	0	0	1	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	c0012	1584	1	1	0	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	c0013	1584	1	1	0	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	c0014	1584	1	0	1	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	c0015	1584	1	0	0	1	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	c0016	1584	1	1	0	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	c0017	1584	1	0	0	1	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	c0018	1584	1	0	1	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A2_chr4_69583417_69644642	1/1	c0001	1611	309	62	56	149	8	32	copy fasta	UGT2A2	chr4	69583417	69644642