JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UGT2A2_chr4_69583417_69644642	0/0	c0002	1611	26	8	6	5	1	6	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0003	1611	16	2	2	6	4	2	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0004	1611	6	0	3	1	1	1	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0005	1611	3	3	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0006	1611	2	2	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0007	1611	2	0	2	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0008	1611	2	0	0	2	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0009	1611	1	0	0	0	0	1	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0010	1611	1	1	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0011	1611	1	1	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0012	1611	1	0	1	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0013	1611	1	0	1	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0014	1611	1	0	0	1	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0015	1611	1	0	0	1	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0016	1611	1	1	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0017	1611	1	0	0	1	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0018	1611	1	1	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0019	1611	1	0	1	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	c0020	1611	1	1	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A3_chr4_68923463_68956804	0/0	c0001	1584	165	41	32	79	4	9	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/1	c0002	1584	153	21	31	71	5	24	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	c0003	1584	123	23	13	76	2	9	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	c0004	1584	5	4	1	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	c0005	1584	3	1	2	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	c0006	1584	3	3	0	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	c0007	1584	1	0	0	1	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	c0008	1584	1	0	0	1	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	c0009	1584	1	0	0	0	0	1	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	c0010	1584	1	1	0	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	c0011	1584	1	0	0	0	0	1	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	c0012	1584	1	0	1	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	c0013	1584	1	0	0	0	1	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2B10_chr4_68810994_68837023	0/1	c0001	1587	361	51	60	195	15	39	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0002	1587	23	8	1	14	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0003	1587	17	0	7	10	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0004	1587	10	4	3	1	1	1	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0005	1587	9	8	1	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0006	1587	7	0	0	7	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0007	1586	6	6	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0008	1587	4	1	0	0	0	3	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0009	1587	4	3	1	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0010	1587	3	3	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0011	1587	3	0	0	0	0	3	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0012	1587	2	2	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0013	1587	2	2	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0014	1587	1	1	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0015	1587	1	1	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0016	1587	1	1	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0017	1587	1	1	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0018	1587	1	1	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023