JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UGT2B10_chr4_68810994_68837023	0/0	c0019	1587	1	0	0	1	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0020	1587	1	0	0	1	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0021	1587	1	0	1	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0022	1587	1	0	0	1	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	c0023	1587	1	1	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B11_chr4_69194951_69219748	1/1	c0001	1590	114	28	21	44	7	12	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0002	1590	104	16	14	57	6	11	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0003	1590	71	23	15	23	0	10	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0004	1590	45	2	3	39	0	1	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0005	1590	15	0	4	11	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0006	1590	12	0	0	12	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0007	1590	7	0	0	7	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0008	1590	5	0	4	0	1	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0009	1590	3	0	3	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0010	1590	3	3	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0011	1590	3	3	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0012	1590	3	0	2	0	0	1	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0013	1590	3	3	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0014	1590	3	1	2	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0015	1590	2	2	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0016	1590	2	2	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0017	1600	2	0	0	2	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0018	1590	2	2	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0019	1590	1	1	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0020	1590	1	0	0	1	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0021	1590	1	1	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0022	1590	1	1	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0023	1590	1	1	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0024	1590	1	0	0	0	0	1	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0025	1590	1	0	1	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0026	1590	1	0	0	1	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0027	1590	1	0	0	1	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0028	1590	1	0	1	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	c0029	1590	1	1	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B15_chr4_68641597_68675652	0/0	c0001	1593	153	37	17	90	0	9	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0002	1593	133	33	16	71	4	9	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0003	1593	64	9	25	15	6	9	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/1	c0004	1593	60	2	10	23	7	17	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0005	1593	3	3	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0006	1593	2	1	1	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0007	1593	2	2	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0008	1593	1	1	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0009	1593	1	1	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0010	1593	1	0	1	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0011	1593	1	0	1	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0012	1593	1	0	0	1	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0013	1593	1	0	1	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0014	1593	1	1	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0015	1593	1	0	0	0	0	1	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0016	1593	1	1	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652