JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UGT2B15_chr4_68641597_68675652	0/0	c0017	1593	1	0	0	1	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0018	1593	1	0	0	0	0	1	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0019	1593	1	1	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0020	1593	1	1	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0021	1593	1	0	0	0	1	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0022	1593	1	1	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0023	1593	1	1	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0024	1593	1	0	0	1	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0025	1593	1	1	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0026	1593	1	0	1	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	c0027	1593	1	0	1	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B17_chr4_68532173_68581322	0/1	c0001	1593	21	9	7	1	0	3	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	1/0	c0002	1593	18	16	0	0	0	1	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	c0003	1593	6	6	0	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	c0004	1593	5	2	2	0	1	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	c0005	1593	5	4	1	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	c0006	1593	5	1	2	1	1	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	c0007	1593	2	2	0	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	c0008	1593	1	1	0	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	c0009	1593	1	1	0	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	c0010	1593	1	1	0	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	c0011	1593	1	1	0	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B28_chr4_69275475_69300050	0/0	c0001	1590	100	12	19	54	6	9	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	1/0	c0002	1590	87	13	12	49	4	8	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	c0003	1590	35	0	1	32	0	2	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	c0004	1590	9	3	5	0	1	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	c0005	1590	7	0	4	0	2	1	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	c0006	1590	5	2	3	0	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	c0007	1590	4	4	0	0	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	c0008	1590	2	2	0	0	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	c0009	1590	2	2	0	0	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	c0010	1590	1	1	0	0	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	c0011	1590	1	0	0	1	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	c0012	1590	1	0	0	1	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	c0013	1590	1	1	0	0	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	c0014	1590	1	1	0	0	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	c0015	1590	1	0	0	0	1	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	c0016	1590	1	1	0	0	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	c0017	1029	1	0	0	1	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B4_chr4_69475165_69500905	1/1	c0001	1587	384	85	57	191	8	41	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	c0002	1587	24	5	12	0	6	1	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	c0003	1587	10	0	0	10	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	c0004	1587	3	3	0	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	c0005	1587	2	2	0	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	c0006	1587	2	2	0	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	c0007	1587	2	0	0	0	2	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	c0008	1587	1	0	1	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	c0009	1587	1	0	1	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	c0010	1587	1	0	0	1	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	c0011	1587	1	0	1	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905