JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UGT2B4_chr4_69475165_69500905	0/0	c0012	1587	1	0	0	1	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	c0013	1587	1	0	0	1	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	c0014	1587	1	1	0	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	c0015	1587	1	0	1	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	c0016	1587	1	0	1	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B7_chr4_69091474_69117987	0/0	c0001	1590	161	36	25	85	2	13	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	1/0	c0002	1590	116	15	18	58	6	18	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	c0003	1590	56	9	20	17	4	6	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	c0004	1590	30	0	2	28	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/1	c0005	1590	25	7	7	4	2	4	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	c0006	1590	8	5	3	0	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	c0007	1590	5	5	0	0	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	c0008	1590	4	4	0	0	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	c0009	1590	3	2	1	0	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	c0010	1590	3	0	0	0	0	3	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	c0011	1590	3	2	1	0	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	c0012	1590	2	0	0	2	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	c0013	1590	1	0	0	1	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	c0014	1590	1	1	0	0	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	c0015	1590	1	0	0	1	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	c0016	1590	1	1	0	0	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	c0017	1590	1	0	0	0	0	1	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	c0018	1590	1	0	0	0	0	1	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	c0019	1590	1	1	0	0	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	c0020	1590	1	0	1	0	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT3A1_chr5_35946006_35996390	1/1	c0001	1572	293	76	52	123	12	28	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	c0002	1572	75	3	8	47	2	15	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	c0003	1572	8	0	0	8	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	c0004	1572	5	3	2	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	c0005	1572	4	4	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	c0006	1572	4	0	0	4	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	c0007	1572	4	4	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	c0008	1572	1	0	0	1	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	c0009	1572	1	0	0	0	0	1	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	c0010	1572	1	0	0	1	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	c0011	1572	1	1	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	c0012	1572	1	1	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A2_chr5_36030021_36071882	1/1	c0001	1572	400	84	76	186	14	38	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	c0002	1572	3	2	1	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	c0003	1572	2	1	0	1	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	c0004	1572	1	1	0	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	c0005	1572	1	0	0	1	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	c0006	1572	1	0	1	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	c0007	1572	1	1	0	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	c0008	1572	1	1	0	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT8_chr4_114593807_114683225	0/1	c0001	1626	214	77	42	65	11	18	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	c0002	1626	36	0	4	26	2	4	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	c0003	1626	11	0	3	7	1	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	c0004	1626	4	0	4	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	1/0	c0005	1626	3	2	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225