JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UGT8_chr4_114593807_114683225	0/0	c0006	1626	2	1	1	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	c0007	1626	2	1	1	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	c0008	1626	1	1	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	c0009	1626	1	1	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	c0010	1626	1	0	0	0	0	1	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	c0011	1626	1	0	0	0	0	1	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	c0012	1626	1	1	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	c0013	1626	1	1	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	c0014	1626	1	1	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	c0015	1626	1	0	1	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UHMK1_chr1_162492818_162534631	1/1	c0001	1260	405	85	70	196	13	39	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	c0002	1260	2	2	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	c0003	1260	2	0	0	2	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	c0004	1260	1	1	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	c0005	1260	1	0	0	0	0	1	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	c0006	1260	1	0	0	0	1	0	copy fasta	UHMK1	chr1	162492818	162534631
UHRF1_chr19_4904501_4967154	0/0	c0001	2382	40	1	7	25	2	5	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0002	2382	36	10	9	14	1	2	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0003	2382	28	4	16	0	2	6	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0004	2382	24	9	7	1	1	6	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0005	2382	20	6	6	4	1	3	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0006	2382	16	6	2	0	2	6	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0007	2382	12	1	9	2	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/1	c0008	2382	12	5	4	0	0	2	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0009	2382	11	9	1	1	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0010	2382	10	0	0	6	0	4	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0011	2382	9	7	0	1	0	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0012	2382	8	0	3	4	0	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0013	2382	8	3	2	0	0	3	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0014	2382	6	6	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0015	2382	6	0	0	6	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0016	2382	6	0	0	6	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0017	2382	5	1	1	3	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0018	2382	4	0	3	1	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0019	2382	4	2	0	1	0	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0020	2382	3	0	0	2	0	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0021	2382	3	3	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0022	2382	3	0	2	1	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0023	2382	2	0	0	2	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0024	2382	2	1	1	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0025	2382	2	0	0	1	1	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0026	2382	2	2	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0027	2382	2	0	0	1	1	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0028	2382	2	2	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0029	2382	2	0	0	2	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0030	2382	2	0	2	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0031	2382	2	2	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0032	2382	2	0	0	2	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0033	2382	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0034	2382	1	0	0	1	0	0	copy fasta	UHRF1	chr19	4904501	4967154