JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UHRF1_chr19_4904501_4967154	0/0	c0035	2382	1	0	1	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0036	2382	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0037	2382	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0038	2382	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0039	2382	1	0	0	0	0	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0040	2382	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	1/0	c0041	2382	1	0	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0042	2382	1	0	0	1	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0043	2382	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0044	2382	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0045	2382	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0046	2382	1	0	0	0	0	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0047	2382	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0048	2382	1	0	0	0	0	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0049	2382	1	0	0	0	0	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0050	2382	1	0	0	0	0	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0051	2382	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0052	2382	1	0	0	0	1	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0053	2382	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	c0054	2382	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF2_chr9_6408199_6512054	1/1	c0001	2409	236	74	47	78	8	27	copy fasta	UHRF2	chr9	6408199	6512054
UHRF2_chr9_6408199_6512054	0/0	c0002	2409	66	2	11	47	1	5	copy fasta	UHRF2	chr9	6408199	6512054
UHRF2_chr9_6408199_6512054	0/0	c0003	2409	14	11	0	0	1	2	copy fasta	UHRF2	chr9	6408199	6512054
UHRF2_chr9_6408199_6512054	0/0	c0004	2409	1	1	0	0	0	0	copy fasta	UHRF2	chr9	6408199	6512054
UHRF2_chr9_6408199_6512054	0/0	c0005	2409	1	0	0	1	0	0	copy fasta	UHRF2	chr9	6408199	6512054
UIMC1_chr5_176900006_177011779	1/0	c0001	2160	116	7	26	62	5	15	copy fasta	UIMC1	chr5	176900006	177011779
UIMC1_chr5_176900006_177011779	0/1	c0002	2160	88	26	14	40	1	6	copy fasta	UIMC1	chr5	176900006	177011779
UIMC1_chr5_176900006_177011779	0/0	c0003	2160	53	2	11	33	3	4	copy fasta	UIMC1	chr5	176900006	177011779
UIMC1_chr5_176900006_177011779	0/0	c0004	2160	40	21	6	5	2	6	copy fasta	UIMC1	chr5	176900006	177011779
UIMC1_chr5_176900006_177011779	0/0	c0005	2160	14	14	0	0	0	0	copy fasta	UIMC1	chr5	176900006	177011779
UIMC1_chr5_176900006_177011779	0/0	c0006	2160	10	9	1	0	0	0	copy fasta	UIMC1	chr5	176900006	177011779
UIMC1_chr5_176900006_177011779	0/0	c0007	2160	5	1	0	0	3	1	copy fasta	UIMC1	chr5	176900006	177011779
UIMC1_chr5_176900006_177011779	0/0	c0008	2160	2	2	0	0	0	0	copy fasta	UIMC1	chr5	176900006	177011779
UIMC1_chr5_176900006_177011779	0/0	c0009	2160	1	0	0	1	0	0	copy fasta	UIMC1	chr5	176900006	177011779
UIMC1_chr5_176900006_177011779	0/0	c0010	2160	1	0	0	1	0	0	copy fasta	UIMC1	chr5	176900006	177011779
ULBP1_chr6_149958943_149978715	1/1	c0001	735	363	48	63	194	13	43	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	c0002	735	44	25	10	1	3	5	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	c0003	735	11	10	1	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	c0004	735	6	6	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	c0005	735	3	0	0	3	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	c0006	735	2	2	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	c0007	735	2	0	0	0	0	2	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	c0008	735	2	0	0	2	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	c0009	735	2	2	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	c0010	735	1	1	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	c0011	735	1	1	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	c0012	735	1	1	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	c0013	735	1	0	0	1	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	c0014	735	1	0	0	1	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP2_chr6_149937014_149954235	0/1	c0001	741	203	48	37	95	7	15	copy fasta	ULBP2	chr6	149937014	149954235