JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ULBP2_chr6_149937014_149954235	1/0	c0002	741	104	12	28	41	5	17	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	c0003	741	89	3	6	70	0	10	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	c0004	741	24	20	1	2	0	1	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	c0005	741	6	6	0	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	c0006	741	4	0	0	4	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	c0007	741	3	3	0	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	c0008	741	3	3	0	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	c0009	741	2	2	0	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	c0010	741	2	0	0	2	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	c0011	741	2	0	0	0	0	2	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	c0012	741	1	1	0	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	c0013	741	1	1	0	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	c0014	741	1	1	0	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	c0015	741	1	0	0	0	0	1	copy fasta	ULBP2	chr6	149937014	149954235
ULBP3_chr6_150056053_150074121	1/1	c0001	735	396	81	70	192	13	38	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	c0002	735	28	1	8	11	4	4	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	c0003	735	13	0	3	7	1	2	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	c0004	735	9	8	1	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	c0005	735	2	0	0	0	0	2	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	c0006	735	2	1	1	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	c0007	735	2	1	1	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	c0008	735	1	1	0	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	c0009	735	1	0	0	1	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	c0010	735	1	1	0	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	c0011	735	1	0	0	1	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	c0012	735	1	1	0	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	c0013	735	1	1	0	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULK1_chr12_131889622_131928150	0/1	c0001	3153	82	19	9	37	6	10	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0002	3153	80	45	14	18	1	2	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0003	3153	74	10	5	50	1	8	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0004	3153	29	6	11	2	2	8	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0005	3153	14	1	4	9	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0006	3153	10	0	5	0	1	4	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0007	3153	8	6	2	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0008	3153	8	4	4	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0009	3153	5	0	0	3	0	2	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0010	3153	4	0	2	0	0	2	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0011	3153	3	0	0	3	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0012	3153	2	0	0	2	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0013	3153	1	1	0	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0014	3153	1	1	0	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0015	3153	1	1	0	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0016	3153	1	0	0	1	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0017	3135	1	1	0	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0018	3153	1	0	0	1	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0019	3153	1	0	1	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0020	3153	1	0	1	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0021	3153	1	1	0	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0022	3153	1	1	0	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0023	3153	1	0	0	0	1	0	copy fasta	ULK1	chr12	131889622	131928150