JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BLTP3B_chr12_100032072_100147874	0/0	c0021	4395	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0022	4395	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0023	4395	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0024	4395	1	0	1	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0025	4395	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0026	4395	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0027	4395	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0028	4395	1	0	0	1	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0029	4395	1	0	0	1	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	c0030	4395	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLVRA_chr7_43753680_43812342	0/0	c0001	891	164	52	32	61	4	15	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	c0002	891	120	25	31	54	4	6	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	1/0	c0003	891	84	4	12	52	5	10	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/1	c0004	891	28	1	6	17	2	1	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	c0005	891	6	6	0	0	0	0	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	c0006	891	2	0	0	0	0	2	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	c0007	891	2	0	0	0	0	2	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	c0008	891	2	0	0	2	0	0	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	c0009	891	1	0	0	1	0	0	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	c0010	891	1	0	0	0	1	0	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	c0011	891	1	1	0	0	0	0	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	c0012	891	1	0	1	0	0	0	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	c0013	891	1	1	0	0	0	0	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	c0014	891	1	0	0	1	0	0	copy fasta	BLVRA	chr7	43753680	43812342
BLVRB_chr19_40442768_40470745	1/0	c0001	621	315	82	67	113	14	38	copy fasta	BLVRB	chr19	40442768	40470745
BLVRB_chr19_40442768_40470745	0/1	c0002	621	38	8	4	11	4	10	copy fasta	BLVRB	chr19	40442768	40470745
BLVRB_chr19_40442768_40470745	0/0	c0003	621	6	6	0	0	0	0	copy fasta	BLVRB	chr19	40442768	40470745
BLVRB_chr19_40442768_40470745	0/0	c0004	621	1	0	0	1	0	0	copy fasta	BLVRB	chr19	40442768	40470745
BLVRB_chr19_40442768_40470745	0/0	c0005	621	1	0	1	0	0	0	copy fasta	BLVRB	chr19	40442768	40470745
BLVRB_chr19_40442768_40470745	0/0	c0006	621	1	0	0	1	0	0	copy fasta	BLVRB	chr19	40442768	40470745
BLZF1_chr1_169363195_169393305	1/1	c0001	1203	255	71	62	75	16	29	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	c0002	1203	99	12	8	67	0	12	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	c0003	1203	8	6	2	0	0	0	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	c0004	1203	2	2	0	0	0	0	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	c0005	1203	1	1	0	0	0	0	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	c0006	1203	1	0	0	0	0	1	copy fasta	BLZF1	chr1	169363195	169393305
BMAL1_chr11_13272790_13392266	1/1	c0001	1881	303	78	48	133	12	30	copy fasta	BMAL1	chr11	13272790	13392266
BMAL1_chr11_13272790_13392266	0/0	c0002	1881	6	0	4	2	0	0	copy fasta	BMAL1	chr11	13272790	13392266
BMAL1_chr11_13272790_13392266	0/0	c0003	1881	2	2	0	0	0	0	copy fasta	BMAL1	chr11	13272790	13392266
BMAL1_chr11_13272790_13392266	0/0	c0004	1881	1	1	0	0	0	0	copy fasta	BMAL1	chr11	13272790	13392266
BMAL1_chr11_13272790_13392266	0/0	c0005	1881	1	1	0	0	0	0	copy fasta	BMAL1	chr11	13272790	13392266
BMAL1_chr11_13272790_13392266	0/0	c0006	1881	1	0	0	1	0	0	copy fasta	BMAL1	chr11	13272790	13392266
BMAL2_chr12_27327836_27430286	1/1	c0001	1911	298	69	50	135	10	32	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	c0002	1911	6	3	0	0	0	3	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	c0003	1911	3	0	0	1	0	2	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	c0004	1911	2	2	0	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	c0005	1911	1	0	0	0	0	1	copy fasta	BMAL2	chr12	27327836	27430286
BMERB1_chr16_15429588_15593259	0/1	c0001	615	222	72	43	72	13	21	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	c0002	615	59	5	18	26	1	9	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	c0003	615	3	0	0	3	0	0	copy fasta	BMERB1	chr16	15429588	15593259