JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ULK1_chr12_131889622_131928150	1/0	c0024	3153	1	0	0	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0025	3153	1	0	0	1	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0026	3153	1	0	0	0	0	1	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0027	3153	1	0	1	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0028	3153	1	1	0	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0029	3153	1	1	0	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0030	3153	1	0	1	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0031	3153	1	0	1	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0032	3153	1	1	0	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0033	3153	1	0	0	0	1	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0034	3153	1	0	1	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0035	3153	1	0	0	0	0	1	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0036	3153	1	0	0	0	1	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	c0037	3186	1	0	0	1	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK2_chr17_19765830_19872936	0/1	c0001	3111	161	35	27	70	9	19	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	1/0	c0002	3111	49	2	2	38	0	6	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	c0003	3111	33	11	3	19	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	c0004	3111	12	0	0	12	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	c0005	3111	9	7	1	0	0	1	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	c0006	3111	7	6	1	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	c0007	3111	4	4	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	c0008	3111	3	0	0	3	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	c0009	3111	2	1	1	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	c0010	3111	2	0	1	0	1	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	c0011	3111	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	c0012	3111	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	c0013	3111	1	0	0	1	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	c0014	3111	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	c0015	3111	1	0	0	1	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	c0016	3111	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK3_chr15_74831118_74848156	0/1	c0001	1419	154	7	38	74	13	21	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	1/0	c0002	1419	127	43	17	51	4	11	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	c0003	1419	110	11	13	75	1	10	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	c0004	1419	19	16	1	1	0	1	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	c0005	1419	10	10	0	0	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	c0006	1419	4	4	0	0	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	c0007	1419	3	3	0	0	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	c0008	1419	2	0	0	2	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	c0009	1419	1	0	0	1	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	c0010	1419	1	0	0	1	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	c0011	1419	1	1	0	0	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	c0012	1419	1	0	0	1	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	c0013	1419	1	0	0	1	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	c0014	1419	1	0	0	0	0	1	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	c0015	1419	1	0	0	1	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	c0016	1419	1	1	0	0	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	c0017	1419	1	0	0	1	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	c0018	1419	1	0	0	1	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	c0019	1419	1	0	1	0	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK4_chr3_41241599_41967103	0/1	c0001	3828	27	12	10	1	0	3	copy fasta	ULK4	chr3	41241599	41967103