JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ULK4_chr3_41241599_41967103	0/0	c0002	3828	6	5	1	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0003	3828	5	2	1	0	1	1	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0004	3828	4	3	1	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0005	3828	3	1	1	1	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0006	3828	3	3	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0007	3828	3	0	1	1	0	1	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0008	3828	2	2	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0009	3828	2	2	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0010	3828	2	2	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0011	3828	2	2	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0012	3828	1	0	0	1	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0013	3828	1	1	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	1/0	c0014	3828	1	0	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0015	3828	1	1	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0016	3828	1	1	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0017	3828	1	1	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0018	3828	1	1	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0019	3828	1	1	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0020	3828	1	0	1	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0021	3828	1	0	0	0	0	1	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0022	3828	1	0	1	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0023	3828	1	0	0	0	1	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	c0024	3828	1	0	1	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
UMAD1_chr7_7635752_7884223	1/1	c0001	414	241	79	49	75	6	30	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	c0002	414	4	1	2	0	0	1	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	c0003	414	2	0	1	0	0	1	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	c0004	414	2	2	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	c0005	414	1	0	0	1	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMODL1_chr21_42066317_42147996	0/0	c0001	3957	29	2	10	11	2	4	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0002	3957	12	0	5	6	0	1	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0003	3957	11	0	0	8	0	3	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0004	3957	10	0	0	10	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0005	3957	9	6	1	0	0	2	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0006	3957	9	0	2	6	0	1	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0007	3957	7	0	1	6	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0008	3957	7	0	0	3	0	4	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0009	3957	6	0	1	0	2	3	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0010	3957	5	0	1	4	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0011	3957	5	0	1	3	1	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0012	3957	5	0	0	5	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0013	3957	5	0	5	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0014	3957	5	0	0	5	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0015	3957	5	1	3	0	1	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0016	3957	5	0	0	5	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0017	3957	5	0	2	1	1	1	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0018	3957	4	0	0	4	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0019	3957	4	4	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0020	3957	4	0	4	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0021	3957	4	0	1	3	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0022	3961	4	0	0	4	0	0	copy fasta	UMODL1	chr21	42066317	42147996